Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OS912_RS10995 Genome accession   NZ_CP113266
Coordinates   2136436..55 (+) Length   121 a.a.
NCBI ID   WP_411912847.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2131436..5055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - coiA 2136436..55 (+) -2136380 - - Machinery gene

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13980.93 Da        Isoelectric Point: 7.8249

>NTDB_id=761453 OS912_RS10995 WP_411912847.1 2136436..55(+) (coiA) [Streptococcus pneumoniae strain BC1]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQIHLRQGPSVRTHFAHKSLKDCDFFFENESPEHIANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLATRREAFGARRAEKFWWL

Nucleotide


Download         Length: 0 bp        

>NTDB_id=761453 OS912_RS10995 WP_411912847.1 2136436..55(+) (coiA) [Streptococcus pneumoniae strain BC1]

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

98.058

85.833

0.842
  coiA Streptococcus pneumoniae D39

98.058

85.833

0.842
  coiA Streptococcus pneumoniae R6

98.058

85.833

0.842
  coiA Streptococcus pneumoniae TIGR4

98.058

85.833

0.842
  coiA Streptococcus mitis NCTC 12261

86.408

85.833

0.742