Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   OS912_RS08860 Genome accession   NZ_CP113266
Coordinates   1736812..1737543 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BC1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1731812..1742543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS912_RS08835 (OS912_08840) - 1733560..1733964 (+) 405 WP_000343113.1 hypothetical protein -
  OS912_RS08840 (OS912_08845) dnaJ 1734179..1735315 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  OS912_RS08845 (OS912_08850) - 1735637..1735876 (-) 240 WP_001813906.1 hypothetical protein -
  OS912_RS08850 (OS912_08855) - 1736037..1736324 (-) 288 WP_268232903.1 hypothetical protein -
  OS912_RS08855 (OS912_08860) - 1736334..1736744 (-) 411 WP_001278304.1 HIT family protein -
  OS912_RS08860 (OS912_08865) pptA 1736812..1737543 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  OS912_RS08865 (OS912_08870) - 1737540..1738589 (+) 1050 WP_000653771.1 ABC transporter permease -
  OS912_RS08870 (OS912_08875) - 1738757..1739086 (-) 330 WP_000132569.1 hypothetical protein -
  OS912_RS08875 (OS912_08880) - 1739362..1739700 (+) 339 WP_000682124.1 LytTR family DNA-binding domain-containing protein -
  OS912_RS08880 (OS912_08885) comE/blpR 1739705..1740442 (+) 738 WP_061741674.1 response regulator transcription factor Regulator
  OS912_RS08885 (OS912_08890) - 1740456..1741796 (+) 1341 WP_061741673.1 sensor histidine kinase -
  OS912_RS08890 (OS912_08895) blpC 1741840..1741995 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=761442 OS912_RS08860 WP_000889923.1 1736812..1737543(+) (pptA) [Streptococcus pneumoniae strain BC1]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=761442 OS912_RS08860 WP_000889923.1 1736812..1737543(+) (pptA) [Streptococcus pneumoniae strain BC1]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCTTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708