Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QLG17_RS07320 Genome accession   NZ_CP124819
Coordinates   1395650..1396306 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain C325     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1390650..1401306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLG17_RS07285 (QLG17_07285) - 1391223..1391699 (-) 477 Protein_1440 Arm DNA-binding domain-containing protein -
  QLG17_RS07290 (QLG17_07290) - 1391780..1392520 (+) 741 WP_022581686.1 hypothetical protein -
  QLG17_RS07310 (QLG17_07310) pgsA 1393216..1393764 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QLG17_RS07315 (QLG17_07315) uvrC 1393821..1395653 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QLG17_RS07320 (QLG17_07320) letA 1395650..1396306 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QLG17_RS07325 (QLG17_07325) yecU 1396602..1396778 (+) 177 WP_001307856.1 protein YecU -
  QLG17_RS07330 (QLG17_07330) yecF 1396765..1396989 (+) 225 WP_000106476.1 DUF2594 family protein YecF -
  QLG17_RS07335 (QLG17_07335) sdiA 1397057..1397779 (-) 723 WP_001154283.1 transcriptional regulator SdiA -
  QLG17_RS07340 (QLG17_07340) tcyN 1398009..1398761 (-) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QLG17_RS07345 (QLG17_07345) tcyL 1398758..1399426 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  QLG17_RS07350 (QLG17_07350) dcyD 1399441..1400427 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=761388 QLG17_RS07320 WP_000611328.1 1395650..1396306(-) (letA) [Escherichia coli strain C325]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=761388 QLG17_RS07320 WP_000611328.1 1395650..1396306(-) (letA) [Escherichia coli strain C325]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482