Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OUY36_RS18570 Genome accession   NZ_CP113258
Coordinates   3926286..3927881 (+) Length   531 a.a.
NCBI ID   WP_267935507.1    Uniprot ID   -
Organism   Stutzerimonas sp. R40042     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3921286..3932881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY36_RS18550 (OUY36_18550) pgeF 3923041..3923778 (-) 738 WP_267935505.1 peptidoglycan editing factor PgeF -
  OUY36_RS18555 (OUY36_18555) rluD 3923775..3924749 (-) 975 WP_063541901.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OUY36_RS18560 (OUY36_18560) - 3924953..3925942 (+) 990 WP_063541899.1 outer membrane protein assembly factor BamD -
  OUY36_RS18565 (OUY36_18565) - 3926063..3926296 (+) 234 WP_110775887.1 PP0621 family protein -
  OUY36_RS18570 (OUY36_18570) pilS 3926286..3927881 (+) 1596 WP_267935507.1 ATP-binding protein Regulator
  OUY36_RS18575 (OUY36_18575) pilR 3928008..3929345 (+) 1338 WP_152481770.1 sigma-54 dependent transcriptional regulator Regulator
  OUY36_RS18580 (OUY36_18580) - 3929424..3930479 (-) 1056 WP_063541891.1 DUF2333 family protein -
  OUY36_RS18585 (OUY36_18585) - 3930694..3932289 (+) 1596 WP_267935508.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58909.99 Da        Isoelectric Point: 8.4608

>NTDB_id=761352 OUY36_RS18570 WP_267935507.1 3926286..3927881(+) (pilS) [Stutzerimonas sp. R40042]
MGTENLAFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIVVAVLVQNPARDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIIAVAIANILLRGRIGFFVAAVAAIGLIYLTFYLSISRPEASSQYVQAAALG
TLCFAAAFLVQGLTRRLQASENLARQRAEDVANLEALNALILQRMRTGIMVLGPQERVLLANQGALQLLGQDESLTGERL
APRCPELLKALRQWRGNPTLRPQNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAH
EIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLTP
QQTVHVETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHSQAQVWLRLFRDEQSDLPIVEVLDDGPGIAADQLHNVFE
PFFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=761352 OUY36_RS18570 WP_267935507.1 3926286..3927881(+) (pilS) [Stutzerimonas sp. R40042]
GTGGGCACTGAAAACCTCGCTTTTCTCGGCGATCAAGGGCGACGCATCCTCCGCCTGTATCACCTCTATCGCCTGACCAT
CGGCCTGGCACTGGTACTGCTGATAAGCAGTGACCTGCACAACGACCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGTGCCTGGCTCTATCTGATCCTGAACATCGTGGTCGCCGTGCTGGTGCAGAACCCTGCGCGTGACCTGCCTGTACTC
GGCCTGGCACTGATGGACGTGATCCTGCTGTCCGGCCTGTTCTATTTCGGTGGAGGCACGCCGAGTGGAATCGGCAACCT
GCTGATCATTGCCGTCGCCATCGCCAACATCCTGCTGCGCGGGCGCATCGGGTTCTTCGTTGCCGCCGTGGCAGCGATTG
GCCTGATCTACCTGACCTTCTATCTCAGCATCAGCCGGCCTGAAGCCAGCAGCCAGTATGTCCAGGCCGCCGCGCTCGGC
ACCCTCTGTTTCGCTGCCGCGTTTCTCGTGCAAGGCCTCACGCGGCGCCTGCAGGCGAGCGAAAATCTGGCACGCCAGCG
CGCCGAGGACGTCGCCAACCTCGAAGCACTCAACGCGCTTATCCTGCAGCGCATGCGCACCGGCATCATGGTGCTGGGCC
CCCAGGAACGCGTGCTGCTGGCCAACCAGGGCGCGCTGCAGCTACTCGGCCAGGACGAGTCGCTGACCGGCGAGCGTCTC
GCCCCGCGCTGCCCGGAGCTGCTCAAAGCCCTGCGACAATGGCGCGGCAATCCCACCCTGCGCCCGCAGAATCTCAAGGC
AACGCCGGGGGGCCCGACGCTCCAGCCGAGCTTCGCCGCCCTGCAACATGGCAACAAGCTCGACACCCTGGTCTTTCTCG
AGGATATCTCGCAGATCGCGCAGAAAGCGCAGCAGCTCAAGCTCGCATCTCTCGGACGACTCACCGCCAGCATTGCCCAC
GAGATACGCAACCCGCTGGGCGCCATCAGCCATGCCGCACAGCTGCTTCAGGAGTCCGAGGAGCTGGACGGCCCGGACCG
CCGCCTGGCGCAGATCATTCAGGACCACTCTCGACGCATGAACCTGGTCATCGAGAACGTCCTGCAACTCTCGCGGCGCC
GGCAGGCCGAGCCACAGTTGCTGGACCTCAAGTACTGGCTGCATCGCTTCGCGAGCGAGTTCCGCCAAGGCCTGACCCCA
CAACAGACGGTGCATGTGGAAACGATCGGCAGTTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGTGGGCAGCAGCATTCGCAGGCGCAGGTCTGGCTGCGACTTTTCCGCGACG
AGCAGAGCGATCTGCCGATCGTCGAGGTGCTCGATGACGGCCCCGGCATTGCTGCCGACCAACTGCACAACGTGTTCGAG
CCGTTCTTCACCACCGAGAGCAAGGGCACCGGCCTGGGGCTTTACATCTCGCGAGAACTTTGCGAGAGCAATCAGGCTCG
ACTGGATTATCGCGAACGGCCCGAAGGCGGTAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGTAAGCTGAGTTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(202-253)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.725

100

0.657