Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ORP33_RS18060 Genome accession   NZ_CP113256
Coordinates   3495625..3496314 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain K1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3490625..3501314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORP33_RS18025 (ORP33_17655) flgN 3490806..3491288 (-) 483 WP_032722609.1 flagellar protein FlgN -
  ORP33_RS18030 (ORP33_17660) flgM 3491304..3491570 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ORP33_RS18035 (ORP33_17665) yvyF 3491651..3492070 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ORP33_RS18040 (ORP33_17670) comFC 3492143..3492865 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  ORP33_RS18045 (ORP33_17675) comFB 3492829..3493125 (-) 297 WP_015483764.1 late competence protein ComFB -
  ORP33_RS18050 (ORP33_17680) comFA 3493185..3494576 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  ORP33_RS18055 (ORP33_17685) fakBA 3494682..3495527 (-) 846 WP_003244125.1 DegV family protein -
  ORP33_RS18060 (ORP33_17690) degU 3495625..3496314 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ORP33_RS18065 (ORP33_17695) degS 3496397..3497554 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ORP33_RS18070 (ORP33_17700) yvyE 3497771..3498424 (+) 654 WP_003227979.1 YigZ family protein -
  ORP33_RS18075 (ORP33_17705) tagV 3498424..3499599 (+) 1176 WP_213414818.1 LCP family protein -
  ORP33_RS18080 (ORP33_17710) tagO 3499672..3500748 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=761288 ORP33_RS18060 WP_003219701.1 3495625..3496314(-) (degU) [Bacillus subtilis strain K1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=761288 ORP33_RS18060 WP_003219701.1 3495625..3496314(-) (degU) [Bacillus subtilis strain K1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1