Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ORP33_RS18040 Genome accession   NZ_CP113256
Coordinates   3492143..3492865 (-) Length   240 a.a.
NCBI ID   WP_128993465.1    Uniprot ID   -
Organism   Bacillus subtilis strain K1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3487143..3497865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORP33_RS18005 (ORP33_17635) fliW 3487283..3487714 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  ORP33_RS18010 (ORP33_17640) yviE 3487735..3488310 (-) 576 WP_015384781.1 DUF6470 family protein -
  ORP33_RS18015 (ORP33_17645) flgL 3488357..3489253 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ORP33_RS18020 (ORP33_17650) flgK 3489264..3490787 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  ORP33_RS18025 (ORP33_17655) flgN 3490806..3491288 (-) 483 WP_032722609.1 flagellar protein FlgN -
  ORP33_RS18030 (ORP33_17660) flgM 3491304..3491570 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ORP33_RS18035 (ORP33_17665) yvyF 3491651..3492070 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ORP33_RS18040 (ORP33_17670) comFC 3492143..3492865 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  ORP33_RS18045 (ORP33_17675) comFB 3492829..3493125 (-) 297 WP_015483764.1 late competence protein ComFB -
  ORP33_RS18050 (ORP33_17680) comFA 3493185..3494576 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  ORP33_RS18055 (ORP33_17685) fakBA 3494682..3495527 (-) 846 WP_003244125.1 DegV family protein -
  ORP33_RS18060 (ORP33_17690) degU 3495625..3496314 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ORP33_RS18065 (ORP33_17695) degS 3496397..3497554 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27405.67 Da        Isoelectric Point: 9.4913

>NTDB_id=761286 ORP33_RS18040 WP_128993465.1 3492143..3492865(-) (comFC) [Bacillus subtilis strain K1]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKAYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=761286 ORP33_RS18040 WP_128993465.1 3492143..3492865(-) (comFC) [Bacillus subtilis strain K1]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGCTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GATCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAGCAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979