Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ORP33_RS16060 Genome accession   NZ_CP113256
Coordinates   3091668..3092312 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain K1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3086668..3097312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORP33_RS16025 (ORP33_15665) mrpB 3087860..3088291 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ORP33_RS16030 (ORP33_15670) mrpC 3088291..3088632 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ORP33_RS16035 (ORP33_15675) mrpD 3088625..3090106 (+) 1482 WP_213414935.1 Na+/H+ antiporter subunit D -
  ORP33_RS16040 (ORP33_15680) mrpE 3090112..3090588 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ORP33_RS16045 (ORP33_15685) mrpF 3090588..3090872 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ORP33_RS16050 (ORP33_15690) mnhG 3090856..3091230 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  ORP33_RS16055 (ORP33_15695) yuxO 3091269..3091649 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  ORP33_RS16060 (ORP33_15700) comA 3091668..3092312 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ORP33_RS16065 (ORP33_15705) comP 3092393..3094690 (-) 2298 WP_267932966.1 histidine kinase Regulator
  ORP33_RS16070 (ORP33_15710) comX 3094698..3094859 (-) 162 WP_049140565.1 competence pheromone ComX -
  ORP33_RS16075 (ORP33_15715) - 3094874..3095734 (-) 861 WP_040081966.1 polyprenyl synthetase family protein -
  ORP33_RS16080 (ORP33_15720) degQ 3095919..3096059 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ORP33_RS16085 - 3096281..3096406 (+) 126 WP_121549029.1 hypothetical protein -
  ORP33_RS16090 (ORP33_15725) - 3096520..3096888 (+) 369 WP_213414936.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=761281 ORP33_RS16060 WP_003220716.1 3091668..3092312(-) (comA) [Bacillus subtilis strain K1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=761281 ORP33_RS16060 WP_003220716.1 3091668..3092312(-) (comA) [Bacillus subtilis strain K1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1