Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OUY06_RS05695 Genome accession   NZ_CP113247
Coordinates   1125185..1126051 (-) Length   288 a.a.
NCBI ID   WP_076645121.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1120185..1131051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS05680 topA 1121420..1123504 (-) 2085 WP_016265142.1 type I DNA topoisomerase -
  OUY06_RS05685 - 1123755..1124189 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  OUY06_RS05690 - 1124218..1125084 (-) 867 WP_035145810.1 NAD(P)H-binding protein -
  OUY06_RS05695 dprA 1125185..1126051 (-) 867 WP_076645121.1 DNA-processing protein DprA Machinery gene
  OUY06_RS05700 - 1126106..1126867 (-) 762 WP_035145815.1 ribonuclease HII -
  OUY06_RS05705 ylqF 1126869..1127717 (-) 849 WP_035145817.1 ribosome biogenesis GTPase YlqF -
  OUY06_RS05710 - 1128137..1129036 (-) 900 WP_016265147.1 hypothetical protein -
  OUY06_RS05715 - 1129246..1130451 (-) 1206 WP_226474316.1 ATP-binding protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31889.84 Da        Isoelectric Point: 8.7458

>NTDB_id=761173 OUY06_RS05695 WP_076645121.1 1125185..1126051(-) (dprA) [Latilactobacillus sakei strain CNSC001WB]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWTLSALEIAQIARLPERYWPTFQASFQSTDLQRQCIDHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINFSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=761173 OUY06_RS05695 WP_076645121.1 1125185..1126051(-) (dprA) [Latilactobacillus sakei strain CNSC001WB]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGACGTTATCGGCGTTAGAAATTGCACAAATTGCGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCGAGTTTTCAAAGTACGGACCTACAACGCCAATGCATCGACCATGAAGTTCGAACGACTTATTTAACG
ATTTTAGATAAAGACTACCCTCAACGCTTATTGGAAACCTATTTGCCACCTGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAGCAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGGGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTTCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGCTTGTTACTATCTGAATACGCTCTCGGTACACCAGCCCGGCGTTATCAATTTCCAGCCCGGAATA
AAATCATTGCGGGGTTATGTCATAGCTTAATTGTGACGGAGGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTTTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGTGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.264

100

0.983
  dprA Legionella pneumophila strain ERS1305867

37.153

100

0.372