Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OOK74_RS07705 Genome accession   NZ_CP113241
Coordinates   1664551..1665951 (-) Length   466 a.a.
NCBI ID   WP_278183261.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1659551..1670951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS07670 moaE 1660253..1660729 (-) 477 WP_274721273.1 molybdopterin synthase catalytic subunit MoaE -
  OOK74_RS07675 moaD 1660731..1660976 (-) 246 WP_274721272.1 molybdopterin synthase sulfur carrier subunit -
  OOK74_RS07680 moaC 1660973..1661452 (-) 480 WP_278182530.1 cyclic pyranopterin monophosphate synthase MoaC -
  OOK74_RS07685 moaB 1661462..1661974 (-) 513 WP_166014654.1 molybdenum cofactor biosynthesis protein B -
  OOK74_RS07690 moaA 1662034..1663023 (-) 990 WP_278182531.1 GTP 3',8-cyclase MoaA -
  OOK74_RS07695 - 1663327..1664223 (+) 897 WP_274721269.1 YvcK family protein -
  OOK74_RS07700 luxU 1664206..1664547 (-) 342 WP_274721268.1 quorum-sensing phosphorelay protein LuxU -
  OOK74_RS07705 luxO 1664551..1665951 (-) 1401 WP_278183261.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OOK74_RS07710 uvrB 1666084..1668114 (-) 2031 WP_278182532.1 excinuclease ABC subunit UvrB -
  OOK74_RS07720 - 1668883..1669551 (-) 669 WP_278182533.1 hypothetical protein -
  OOK74_RS07725 - 1669611..1670747 (-) 1137 WP_278182534.1 glycoside hydrolase family 5 protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51853.30 Da        Isoelectric Point: 6.2956

>NTDB_id=761105 OOK74_RS07705 WP_278183261.1 1664551..1665951(-) (luxO) [Vibrio sp. gvc]
MVEDTASIAALYRSFLAPLNIDINIVGTGRDAIASIAHREPDLILLDLRLPDMTGMDVLHAVKQKAPDVPIVFMTAHGSI
DSAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDLDNNNHTYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGEKPFIAINCAAIPKDLIESELFGHVKGAFTGAASERQGAAEAADGGTLFLDELCEMDLEL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQAGRFREDLYYRLYVIPLHLPSLRERGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRRYEWPGNVRQLQNVLRNVVVLNEGCEITLNMLPPPLNHPSVPHLREEIKLDQQHVISVH
EIFPLWVTEKQAIEQAIAACDGNIPRAASYLAVSPSTIYRKLQTWNEQATEKVTVKEKVTAKEQER

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=761105 OOK74_RS07705 WP_278183261.1 1664551..1665951(-) (luxO) [Vibrio sp. gvc]
ATGGTCGAAGATACCGCGTCGATTGCGGCGCTGTATCGCTCTTTTCTCGCACCGCTAAATATCGATATCAATATTGTGGG
AACTGGGCGTGATGCGATTGCGAGCATTGCACACCGCGAGCCTGACTTGATTCTGCTTGATTTACGTCTGCCGGATATGA
CTGGCATGGATGTGTTGCATGCGGTTAAGCAAAAAGCCCCTGATGTACCGATCGTGTTTATGACCGCGCATGGTTCGATT
GACAGCGCTGTGGAAGCGATGCGCTACGGTGCGCAAGATTTTTTGATCAAACCTTGTGAAGCCGATCGGCTGCGGGTCAC
GGTCAATAACGCGATTCGTAAAGCATCAAAGCTTAAAAACGACCTTGATAACAACAATCATACTTATCAAGGTTTTATTG
GTAGTAGCCAAACAATGCAAGCGGTGTATCGCACGATTGATTCCGCCGCGAGTAGCAAAGCGAGCATTTTCATTACCGGT
GAAAGTGGTACCGGTAAAGAGGTGTGTGCGGAAGCCATTCATGCGGCCAGTAAACGGGGTGAAAAACCGTTTATCGCGAT
TAACTGTGCAGCGATCCCGAAAGATTTGATTGAAAGTGAGCTATTTGGCCACGTAAAAGGCGCGTTCACTGGAGCGGCCA
GCGAACGGCAAGGTGCCGCGGAAGCGGCTGATGGTGGAACGCTGTTTTTGGATGAGCTGTGTGAAATGGATTTAGAGTTG
CAGACCAAATTACTGCGCTTTATTCAAACTGGCACATTCCAAAAAGTTGGTTCGTCAAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGCGCCACCAACCGCGATCCTTGGAAAGAAGTGCAAGCTGGGCGTTTTCGGGAAGACTTATACTACCGTTTAT
ACGTGATCCCGCTGCATTTGCCCTCACTGCGTGAGCGCGGTGATGATGTGATTGAGATTGCCTATTCTTTGCTGGGTTTT
ATGTCCAAAGAGGAAGGCAAAGATTTTGTGCGTTTGTCGGCCGAAGTGGTGGAGCGTTTTCGTCGCTACGAATGGCCAGG
TAATGTGCGCCAATTACAAAACGTATTGCGCAATGTGGTGGTGCTGAATGAGGGATGTGAAATAACCCTTAATATGTTGC
CTCCTCCGCTTAATCACCCTTCGGTACCGCATTTACGTGAAGAAATTAAACTAGATCAACAGCATGTAATCTCAGTACAT
GAAATTTTTCCGTTATGGGTCACGGAAAAACAAGCGATTGAGCAAGCGATTGCCGCTTGTGATGGTAATATTCCGCGCGC
CGCCAGTTATTTAGCCGTCAGCCCATCGACCATTTATCGTAAGCTGCAAACTTGGAATGAACAAGCGACAGAGAAAGTCA
CAGTAAAAGAGAAAGTTACCGCAAAAGAGCAGGAGCGCTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)

Bacterial regulatory protein, Fis family (HTH_8)

(405-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

89.91

95.708

0.861
  pilR Pseudomonas aeruginosa PAK

38.288

95.279

0.365