Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   OOK74_RS02350 Genome accession   NZ_CP113241
Coordinates   472715..473332 (-) Length   205 a.a.
NCBI ID   WP_274722406.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 467715..478332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS02320 sspB 467760..468245 (+) 486 WP_274722401.1 ClpXP protease specificity-enhancing factor -
  OOK74_RS02325 - 468362..468931 (-) 570 WP_274722402.1 BON domain-containing protein -
  OOK74_RS02330 - 468934..469524 (-) 591 WP_274722403.1 phosphoheptose isomerase -
  OOK74_RS02335 - 469528..469896 (-) 369 WP_166013619.1 YraN family protein -
  OOK74_RS02340 - 469883..471688 (-) 1806 WP_278183047.1 penicillin-binding protein activator -
  OOK74_RS02345 rsmI 471754..472620 (+) 867 WP_278183048.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  OOK74_RS02350 hapR 472715..473332 (-) 618 WP_274722406.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OOK74_RS02355 hpt 473645..474178 (+) 534 WP_274722407.1 hypoxanthine phosphoribosyltransferase -
  OOK74_RS02360 can 474249..474917 (-) 669 WP_274722408.1 carbonate dehydratase -
  OOK74_RS02365 - 475171..476088 (+) 918 WP_166013614.1 ABC transporter ATP-binding protein -
  OOK74_RS02370 - 476094..476864 (+) 771 WP_278183049.1 ABC transporter permease -
  OOK74_RS02375 panC 476945..477826 (-) 882 WP_278183050.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23786.55 Da        Isoelectric Point: 7.0937

>NTDB_id=761093 OOK74_RS02350 WP_274722406.1 472715..473332(-) (hapR) [Vibrio sp. gvc]
MDTSIEKPQRTRLAPHKRKLQLMEIALEVFAKRGIGRAGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVQQYSNFL
TDHIDLDLDVKSNLQNLCKQMVQLAITDCHWLKVLFEWSTSTREEVWPLFVATNRTNQLLIKNMFSKAMQRGELCEKHDV
EHITSLFHGIFYSLFLQINRVGAQDAMYKLVDSYLNMLCIYKTKV

Nucleotide


Download         Length: 618 bp        

>NTDB_id=761093 OOK74_RS02350 WP_274722406.1 472715..473332(-) (hapR) [Vibrio sp. gvc]
ATGGATACATCAATAGAAAAACCCCAGCGAACTCGCTTGGCCCCTCATAAACGTAAACTGCAACTGATGGAAATCGCCTT
AGAAGTGTTTGCAAAGCGTGGGATAGGCCGCGCGGGTCATGCTGACATTGCAGAAATTGCCCAGGTCTCGGTGGCAACCG
TGTTTAATTACTTCCCGACTCGTGAAGATCTGGTGGATGATGTGCTCAATTTTGTGGTTCAGCAGTATTCGAATTTCCTC
ACCGATCACATCGATTTGGATTTAGATGTGAAAAGCAACCTACAAAATTTGTGCAAACAGATGGTGCAACTGGCAATCAC
CGATTGCCACTGGCTAAAAGTATTGTTTGAATGGAGTACATCAACCCGCGAGGAAGTGTGGCCGCTATTCGTTGCCACTA
ACCGAACGAATCAATTGCTGATCAAAAATATGTTTAGCAAAGCGATGCAACGTGGTGAATTATGTGAAAAGCATGATGTT
GAACATATCACCAGCCTGTTTCATGGCATCTTTTACTCACTGTTTCTGCAGATCAACCGCGTTGGTGCGCAAGATGCGAT
GTATAAACTGGTTGATAGCTATCTCAATATGCTATGTATCTATAAAACCAAGGTTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

85.149

98.537

0.839
  hapR Vibrio cholerae strain A1552

85.149

98.537

0.839
  opaR Vibrio parahaemolyticus RIMD 2210633

68.159

98.049

0.668