Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   OTU47_RS09595 Genome accession   NZ_CP113115
Coordinates   1816517..1817167 (-) Length   216 a.a.
NCBI ID   WP_001866227.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1811517..1822167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS09575 (OTU47_09575) - 1812123..1813304 (-) 1182 WP_050118044.1 hypothetical protein -
  OTU47_RS09580 (OTU47_09580) - 1813308..1813895 (-) 588 WP_000933542.1 ATP-binding cassette domain-containing protein -
  OTU47_RS09585 (OTU47_09585) - 1813927..1814151 (-) 225 WP_050118045.1 hypothetical protein -
  OTU47_RS09590 (OTU47_09590) comEC/celB 1814293..1816533 (-) 2241 WP_050118046.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OTU47_RS09595 (OTU47_09595) comEA/celA/cilE 1816517..1817167 (-) 651 WP_001866227.1 helix-hairpin-helix domain-containing protein Machinery gene
  OTU47_RS09600 (OTU47_09600) - 1817235..1817804 (-) 570 WP_000443739.1 GNAT family N-acetyltransferase -
  OTU47_RS09605 (OTU47_09605) ald 1817981..1819092 (+) 1112 Protein_1855 alanine dehydrogenase -
  OTU47_RS09610 (OTU47_09610) - 1819393..1819718 (-) 326 Protein_1856 TfoX/Sxy family protein -
  OTU47_RS09615 (OTU47_09615) - 1819721..1820221 (-) 501 WP_050118047.1 GNAT family N-acetyltransferase -
  OTU47_RS09620 (OTU47_09620) - 1820414..1821382 (-) 969 WP_000658183.1 PhoH family protein -
  OTU47_RS09625 (OTU47_09625) - 1821468..1821683 (-) 216 WP_001232082.1 YozE family protein -

Sequence


Protein


Download         Length: 216 a.a.        Molecular weight: 23095.34 Da        Isoelectric Point: 6.0661

>NTDB_id=760453 OTU47_RS09595 WP_001866227.1 1816517..1817167(-) (comEA/celA/cilE) [Streptococcus pneumoniae strain NP2]
MEAIIEKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQAEVAAVSKDSSTGKEVNKEEKEEPVEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGSGTASSTSKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGAKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=760453 OTU47_RS09595 WP_001866227.1 1816517..1817167(-) (comEA/celA/cilE) [Streptococcus pneumoniae strain NP2]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGAGGATT
TTTCCTGCTAAAGCCAGCTCCACAAACACCTGTCAAAGAGACGAATTTGCAGGCTGAAGTTGCAGCTGTTTCCAAGGACT
CATCGACCGGAAAGGAAGTGAACAAGGAAGAGAAGGAAGAACCAGTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGTCAACAGACTGGTTCGGGGACAGCTTCTTCAACAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATTGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGCCAAGACCATAGAAAAACTTAAAGACTATGTTA
CAGTGGATTAA

Domains


Predicted by InterproScan.

(151-214)

(76-126)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

98.148

100

0.981

  comEA/celA/cilE Streptococcus pneumoniae Rx1

96.296

100

0.963

  comEA/celA/cilE Streptococcus pneumoniae D39

96.296

100

0.963

  comEA/celA/cilE Streptococcus pneumoniae R6

96.296

100

0.963

  comEA/celA/cilE Streptococcus mitis NCTC 12261

95.833

100

0.958

  comEA/celA/cilE Streptococcus mitis SK321

93.056

100

0.931

  comEA Lactococcus lactis subsp. cremoris KW2

43.612

100

0.458

  comEA Latilactobacillus sakei subsp. sakei 23K

34.335

100

0.37

  comEA Bacillus subtilis subsp. subtilis str. 168

41.053

87.963

0.361