Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   OTU47_RS04310 Genome accession   NZ_CP113115
Coordinates   807935..808555 (+) Length   206 a.a.
NCBI ID   WP_000839908.1    Uniprot ID   A0A0B7M636
Organism   Streptococcus pneumoniae strain NP2     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 802935..813555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS11960 - 803117..803395 (-) 279 WP_044788616.1 hypothetical protein -
  OTU47_RS04290 (OTU47_04290) - 803536..804168 (-) 633 WP_044788614.1 ABC transporter ATP-binding protein -
  OTU47_RS04295 (OTU47_04295) - 804170..806185 (-) 2016 WP_044788613.1 DUF1430 domain-containing protein -
  OTU47_RS04300 (OTU47_04300) - 806330..806500 (-) 171 WP_000742180.1 PhrA family quorum-sensing system peptide -
  OTU47_RS04305 (OTU47_04305) - 806689..807552 (+) 864 WP_001093623.1 helix-turn-helix domain-containing protein -
  OTU47_RS04310 (OTU47_04310) comM 807935..808555 (+) 621 WP_000839908.1 hypothetical protein Regulator
  OTU47_RS04315 (OTU47_04315) tsaE 808642..809085 (+) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  OTU47_RS04320 (OTU47_04320) - 809075..809593 (+) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  OTU47_RS04325 (OTU47_04325) brpA 809601..810617 (+) 1017 WP_000239282.1 biofilm formation/cell division transcriptional regulator BrpA -
  OTU47_RS04330 (OTU47_04330) cinA 810702..811958 (+) 1257 WP_000642707.1 competence/damage-inducible protein A Machinery gene
  OTU47_RS04335 (OTU47_04335) recA 812013..813179 (+) 1167 WP_001085463.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23552.72 Da        Isoelectric Point: 10.1254

>NTDB_id=760421 OTU47_RS04310 WP_000839908.1 807935..808555(+) (comM) [Streptococcus pneumoniae strain NP2]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTRKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTILATLLFLRNPMTI
VSLLIYIGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIVTLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=760421 OTU47_RS04310 WP_000839908.1 807935..808555(+) (comM) [Streptococcus pneumoniae strain NP2]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCCTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCCGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCGGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTAGACAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTTTTCTTAAGAAATCCAATGACCATT
GTCTCACTTCTGATTTATATTGGACTGGGCTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGTTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7M636

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

100

100

1
  comM Streptococcus pneumoniae R6

100

100

1
  comM Streptococcus pneumoniae TIGR4

100

100

1
  comM Streptococcus mitis NCTC 12261

38.974

94.66

0.369
  comM Streptococcus mitis SK321

38.974

94.66

0.369