Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   OTU45_RS03020 Genome accession   NZ_CP113114
Coordinates   604559..605290 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 599559..610290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU45_RS02995 (OTU45_02995) dnaK 599874..601697 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  OTU45_RS03000 (OTU45_03000) - 601710..602063 (+) 354 WP_000115730.1 hypothetical protein -
  OTU45_RS03005 (OTU45_03005) dnaJ 602268..603404 (+) 1137 WP_267750035.1 molecular chaperone DnaJ -
  OTU45_RS03010 (OTU45_03010) - 603784..604071 (-) 288 WP_000777760.1 hypothetical protein -
  OTU45_RS03015 (OTU45_03015) - 604081..604491 (-) 411 WP_001278301.1 HIT family protein -
  OTU45_RS03020 (OTU45_03020) pptA 604559..605290 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  OTU45_RS03025 (OTU45_03025) - 605287..606336 (+) 1050 WP_050116080.1 ABC transporter permease -
  OTU45_RS03030 (OTU45_03030) - 606533..606844 (-) 312 WP_267750036.1 helicase BlpT -
  OTU45_RS03035 (OTU45_03035) - 607121..607459 (+) 339 WP_047499348.1 LytTR family DNA-binding domain-containing protein -
  OTU45_RS03040 (OTU45_03040) comE/blpR 607464..608201 (+) 738 WP_050116081.1 response regulator transcription factor Regulator
  OTU45_RS03045 (OTU45_03045) - 608215..609555 (+) 1341 WP_001017642.1 sensor histidine kinase -
  OTU45_RS03050 (OTU45_03050) blpC 609626..609754 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=760323 OTU45_RS03020 WP_000889923.1 604559..605290(+) (pptA) [Streptococcus pneumoniae strain NP1]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=760323 OTU45_RS03020 WP_000889923.1 604559..605290(+) (pptA) [Streptococcus pneumoniae strain NP1]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTATGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708