Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   P7I96_RS30855 Genome accession   NZ_CP124660
Coordinates   6529916..6530440 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2022CK-00160     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6524916..6535440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I96_RS30840 (P7I96_30840) aroB 6526032..6527138 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  P7I96_RS30845 (P7I96_30845) aroK 6527188..6527706 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P7I96_RS30850 (P7I96_30850) pilQ 6527718..6529862 (-) 2145 WP_014603377.1 type 4a pilus secretin PilQ Machinery gene
  P7I96_RS30855 (P7I96_30855) comL/pilP 6529916..6530440 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P7I96_RS30860 (P7I96_30860) pilO 6530437..6531060 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P7I96_RS30865 (P7I96_30865) pilN 6531057..6531653 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P7I96_RS30870 (P7I96_30870) pilM 6531653..6532042 (-) 390 Protein_6095 type IV pilus assembly protein PilM -
  P7I96_RS30880 (P7I96_30880) pilM 6533707..6534387 (-) 681 Protein_6097 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=760305 P7I96_RS30855 WP_003095836.1 6529916..6530440(-) (comL/pilP) [Pseudomonas aeruginosa strain 2022CK-00160]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=760305 P7I96_RS30855 WP_003095836.1 6529916..6530440(-) (comL/pilP) [Pseudomonas aeruginosa strain 2022CK-00160]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362