Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   OVY33_RS06655 Genome accession   NZ_CP113107
Coordinates   1348937..1350286 (-) Length   449 a.a.
NCBI ID   WP_103357137.1    Uniprot ID   A0A2K3YY11
Organism   Staphylococcus rostri strain PJFA-333     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1343937..1355286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVY33_RS06620 - 1343940..1344278 (-) 339 WP_240624097.1 hypothetical protein -
  OVY33_RS06625 - 1344268..1344720 (-) 453 WP_103357131.1 hypothetical protein -
  OVY33_RS06630 - 1345159..1345662 (-) 504 WP_103357132.1 DUF1643 domain-containing protein -
  OVY33_RS06635 - 1345677..1345988 (-) 312 WP_103357133.1 DUF960 family protein -
  OVY33_RS06640 - 1346084..1346422 (-) 339 WP_103357134.1 SAUGI family uracil-DNA glycosylase inhibitor -
  OVY33_RS06645 - 1346966..1347253 (+) 288 WP_103357135.1 hypothetical protein -
  OVY33_RS06650 ccrB 1347289..1348917 (-) 1629 WP_103357136.1 cassette chromosome recombinase CcrB Machinery gene
  OVY33_RS06655 ccrA 1348937..1350286 (-) 1350 WP_103357137.1 cassette chromosome recombinase CcrA Machinery gene
  OVY33_RS06660 cch1 1350786..1352570 (-) 1785 WP_103357139.1 cassette chromosome replicative helicase -
  OVY33_RS06665 ssb 1352570..1352863 (-) 294 WP_031863540.1 cassette chromosome ssDNA-binding protein -
  OVY33_RS06670 - 1353035..1354546 (-) 1512 WP_309306391.1 hypothetical protein -
  OVY33_RS06675 - 1354608..1355273 (-) 666 WP_126510823.1 Cthe_2314 family HEPN domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52203.90 Da        Isoelectric Point: 9.9939

>NTDB_id=760295 OVY33_RS06655 WP_103357137.1 1348937..1350286(-) (ccrA) [Staphylococcus rostri strain PJFA-333]
MKQAIGYLRQSTLKQQSLSAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQVITLIQQGHCDVLCCYRLNRLHRN
LKNALKLIRLCQKHQVHILSVCDGYFNLDSSFDRLKLNIFISLAELESDNISEQVKNGLREKARQGKLITTHAPFGYHYH
DGTFTINKDEAPTVKAIFDDYVEGYGYKKISQRLEKSNHLINRKPFQVRCIILNPNYCGRVLNQYGQYDNMFPPIVSVSL
YEYAQKVRNQRQVNRRSSDNQLKQKIKCPCCGSTLTNLTIRKKKHALRYYVCPRNMNASRFVCDFKGINAQMLETRVLTT
CKDFFQNQQLYSKINQTIQQQLKNQRALETKHTLTQEQLIEKLAQGTITADTFREKSLLLQQQSKTNSSISSTQIQRAFQ
NVIQQCFTLNMLYPYIDEIHITENKTLTGIYFKNEPLNIVNQDMKSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=760295 OVY33_RS06655 WP_103357137.1 1348937..1350286(-) (ccrA) [Staphylococcus rostri strain PJFA-333]
ATGAAACAAGCAATAGGTTATCTACGTCAAAGTACACTCAAACAACAATCACTCTCAGCCCAAAAACAAACCATCAAGGC
ATTAGCCGAAAAGCATAATATTCAACACATTACCTTTTATAGCGATAAGCAATCAGGTCGAACTGATAAACGCAATGGTT
ACCAACAAGTCATTACGCTAATTCAACAAGGTCACTGTGACGTATTATGTTGCTACAGACTGAATCGATTACACCGAAAT
TTGAAAAATGCTTTGAAACTTATCAGATTATGTCAAAAGCATCAGGTTCATATCTTAAGTGTCTGTGATGGCTATTTCAA
CTTAGACTCATCTTTTGATCGTTTAAAACTTAACATTTTCATCAGCCTTGCAGAGTTAGAATCTGATAATATCAGTGAAC
AGGTCAAAAATGGACTACGCGAAAAAGCACGCCAAGGTAAACTCATTACAACTCACGCCCCTTTTGGCTATCACTATCAC
GACGGGACATTTACTATAAATAAGGATGAAGCACCTACTGTAAAAGCCATATTCGACGACTACGTGGAAGGTTACGGATA
CAAGAAAATTTCTCAACGCTTAGAAAAATCCAATCACCTCATCAACCGAAAACCTTTCCAAGTGCGTTGTATTATCCTAA
ATCCTAATTACTGTGGCCGAGTGCTAAATCAATATGGACAATACGATAATATGTTCCCCCCTATTGTTTCAGTCAGCTTG
TATGAATACGCTCAAAAAGTTAGAAACCAAAGACAAGTTAATCGTAGATCTTCAGACAACCAACTCAAACAAAAAATCAA
ATGCCCTTGTTGTGGTTCAACGCTCACCAATCTGACCATTAGGAAAAAGAAGCACGCATTGCGTTATTATGTTTGTCCAA
GAAATATGAATGCTTCACGTTTTGTCTGTGATTTCAAGGGCATCAATGCACAAATGCTAGAAACAAGGGTCTTAACAACT
TGTAAGGACTTTTTTCAAAATCAACAGCTCTATTCAAAAATTAATCAAACAATCCAACAACAACTAAAAAACCAAAGAGC
TTTGGAAACGAAACATACACTCACCCAAGAACAACTAATAGAAAAGCTCGCTCAAGGGACGATTACTGCAGATACATTCA
GAGAAAAATCTCTACTGTTACAACAACAATCAAAAACCAATTCATCCATTAGCTCGACTCAAATTCAAAGGGCTTTTCAA
AATGTCATTCAACAATGTTTCACGTTAAACATGTTATACCCCTATATTGATGAAATTCATATTACAGAAAACAAAACGCT
TACAGGAATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAGATATGAAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3YY11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

76.837

100

0.768
  ccrA Staphylococcus aureus N315

71.492

100

0.715