Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   P7I96_RS13975 Genome accession   NZ_CP124660
Coordinates   2902479..2903123 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain 2022CK-00160     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2897479..2908123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I96_RS13960 (P7I96_13960) - 2898113..2899327 (+) 1215 WP_023086158.1 MFS transporter -
  P7I96_RS13965 (P7I96_13965) - 2899343..2900371 (-) 1029 WP_003097554.1 AraC family transcriptional regulator -
  P7I96_RS13970 (P7I96_13970) pqsH 2900989..2902137 (+) 1149 WP_003090354.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  P7I96_RS13975 (P7I96_13975) letA 2902479..2903123 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  P7I96_RS13980 (P7I96_13980) uvrC 2903124..2904950 (+) 1827 WP_003097551.1 excinuclease ABC subunit UvrC -
  P7I96_RS13985 (P7I96_13985) pgsA 2904984..2905544 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P7I96_RS13995 (P7I96_13995) - 2905916..2907849 (+) 1934 Protein_2764 integrase arm-type DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=760260 P7I96_RS13975 WP_003090351.1 2902479..2903123(+) (letA) [Pseudomonas aeruginosa strain 2022CK-00160]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=760260 P7I96_RS13975 WP_003090351.1 2902479..2903123(+) (letA) [Pseudomonas aeruginosa strain 2022CK-00160]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537