Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OSZ56_RS12445 Genome accession   NZ_CP113105
Coordinates   2556913..2557308 (+) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain BIAI 117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2551913..2562308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSZ56_RS12420 (OSZ56_12420) - 2552856..2553260 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  OSZ56_RS12425 (OSZ56_12425) - 2554139..2554372 (+) 234 WP_000384523.1 DUF1146 family protein -
  OSZ56_RS12430 (OSZ56_12430) murA 2554483..2555748 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OSZ56_RS12435 (OSZ56_12435) fabZ 2555782..2556222 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OSZ56_RS12440 (OSZ56_12440) - 2556279..2556719 (-) 441 WP_064289586.1 YwpF-like family protein -
  OSZ56_RS12445 (OSZ56_12445) ssb 2556913..2557308 (+) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  OSZ56_RS12450 (OSZ56_12450) sceD 2557697..2558392 (+) 696 WP_000752015.1 lytic transglycosylase SceD -
  OSZ56_RS12455 (OSZ56_12455) tenA 2558917..2559606 (+) 690 WP_000396068.1 thiaminase II -
  OSZ56_RS12460 (OSZ56_12460) thiD 2559599..2560429 (+) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OSZ56_RS12465 (OSZ56_12465) thiM 2560413..2561204 (+) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  OSZ56_RS12470 (OSZ56_12470) thiE 2561206..2561847 (+) 642 WP_000483150.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=760231 OSZ56_RS12445 WP_000932696.1 2556913..2557308(+) (ssb) [Staphylococcus aureus strain BIAI 117]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=760231 OSZ56_RS12445 WP_000932696.1 2556913..2557308(+) (ssb) [Staphylococcus aureus strain BIAI 117]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCATCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985