Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   P7I93_RS31625 Genome accession   NZ_CP124658
Coordinates   6667142..6667816 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain 2022CK-00068     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6662142..6672816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I93_RS31600 (P7I93_31600) - 6662641..6663975 (+) 1335 WP_003096546.1 aspartate aminotransferase family protein -
  P7I93_RS31605 (P7I93_31605) - 6664041..6664403 (+) 363 WP_003096551.1 cupin domain-containing protein -
  P7I93_RS31610 (P7I93_31610) rpmG 6664540..6664695 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  P7I93_RS31615 (P7I93_31615) rpmB 6664707..6664943 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  P7I93_RS31620 (P7I93_31620) - 6665299..6666879 (+) 1581 WP_003096557.1 ABC transporter substrate-binding protein -
  P7I93_RS31625 (P7I93_31625) radC 6667142..6667816 (-) 675 WP_003096559.1 DNA repair protein RadC Machinery gene
  P7I93_RS31630 (P7I93_31630) coaBC 6667956..6669164 (+) 1209 WP_023980357.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  P7I93_RS31635 (P7I93_31635) dut 6669172..6669627 (+) 456 WP_003096567.1 dUTP diphosphatase -
  P7I93_RS31640 (P7I93_31640) - 6669664..6672270 (+) 2607 WP_023092763.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=760212 P7I93_RS31625 WP_003096559.1 6667142..6667816(-) (radC) [Pseudomonas aeruginosa strain 2022CK-00068]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=760212 P7I93_RS31625 WP_003096559.1 6667142..6667816(-) (radC) [Pseudomonas aeruginosa strain 2022CK-00068]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTACGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGTTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACCGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCTCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397