Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   OSZ56_RS01690 Genome accession   NZ_CP113105
Coordinates   320413..320859 (+) Length   148 a.a.
NCBI ID   WP_001791207.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BIAI 117     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315413..325859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSZ56_RS01655 (OSZ56_01655) - 315907..316110 (+) 204 WP_000087561.1 YqgQ family protein -
  OSZ56_RS01660 (OSZ56_01660) - 316107..317093 (+) 987 WP_000161314.1 ROK family glucokinase -
  OSZ56_RS01665 (OSZ56_01665) - 317093..317422 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OSZ56_RS01670 (OSZ56_01670) - 317419..318042 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  OSZ56_RS01675 (OSZ56_01675) comGA 318094..319068 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  OSZ56_RS01680 (OSZ56_01680) comGB 319040..320110 (+) 1071 Protein_297 competence type IV pilus assembly protein ComGB -
  OSZ56_RS01685 (OSZ56_01685) comGC 320124..320435 (+) 312 WP_061843224.1 competence type IV pilus major pilin ComGC Machinery gene
  OSZ56_RS01690 (OSZ56_01690) comGD 320413..320859 (+) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  OSZ56_RS01695 (OSZ56_01695) comGE 320846..321145 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  OSZ56_RS01700 (OSZ56_01700) comGF 321063..321560 (+) 498 WP_001794328.1 competence type IV pilus minor pilin ComGF Machinery gene
  OSZ56_RS01705 (OSZ56_01705) - 321657..321803 (+) 147 WP_001789879.1 hypothetical protein -
  OSZ56_RS01710 (OSZ56_01710) - 321793..322317 (+) 525 WP_001015125.1 shikimate kinase -
  OSZ56_RS01715 (OSZ56_01715) gcvT 322476..323567 (+) 1092 WP_103244798.1 glycine cleavage system aminomethyltransferase GcvT -
  OSZ56_RS01720 (OSZ56_01720) gcvPA 323587..324933 (+) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=760207 OSZ56_RS01690 WP_001791207.1 320413..320859(+) (comGD) [Staphylococcus aureus strain BIAI 117]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTLTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=760207 OSZ56_RS01690 WP_001791207.1 320413..320859(+) (comGD) [Staphylococcus aureus strain BIAI 117]
ATGGAGAAGCAGTTGCAAATTAGAAAACAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACATTGACATCTAAAGGATTAAGTAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAACTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986