Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   OSZ56_RS01675 Genome accession   NZ_CP113105
Coordinates   318094..319068 (+) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain BIAI 117     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313094..324068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSZ56_RS01640 (OSZ56_01640) rpmG 313554..313703 (+) 150 WP_001265709.1 50S ribosomal protein L33 -
  OSZ56_RS01645 (OSZ56_01645) - 313912..314451 (+) 540 WP_000164553.1 5-formyltetrahydrofolate cyclo-ligase -
  OSZ56_RS01650 (OSZ56_01650) - 314463..315926 (+) 1464 WP_001017867.1 rhomboid family protein -
  OSZ56_RS01655 (OSZ56_01655) - 315907..316110 (+) 204 WP_000087561.1 YqgQ family protein -
  OSZ56_RS01660 (OSZ56_01660) - 316107..317093 (+) 987 WP_000161314.1 ROK family glucokinase -
  OSZ56_RS01665 (OSZ56_01665) - 317093..317422 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OSZ56_RS01670 (OSZ56_01670) - 317419..318042 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  OSZ56_RS01675 (OSZ56_01675) comGA 318094..319068 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  OSZ56_RS01680 (OSZ56_01680) comGB 319040..320110 (+) 1071 Protein_297 competence type IV pilus assembly protein ComGB -
  OSZ56_RS01685 (OSZ56_01685) comGC 320124..320435 (+) 312 WP_061843224.1 competence type IV pilus major pilin ComGC Machinery gene
  OSZ56_RS01690 (OSZ56_01690) comGD 320413..320859 (+) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  OSZ56_RS01695 (OSZ56_01695) comGE 320846..321145 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  OSZ56_RS01700 (OSZ56_01700) comGF 321063..321560 (+) 498 WP_001794328.1 competence type IV pilus minor pilin ComGF Machinery gene
  OSZ56_RS01705 (OSZ56_01705) - 321657..321803 (+) 147 WP_001789879.1 hypothetical protein -
  OSZ56_RS01710 (OSZ56_01710) - 321793..322317 (+) 525 WP_001015125.1 shikimate kinase -
  OSZ56_RS01715 (OSZ56_01715) gcvT 322476..323567 (+) 1092 WP_103244798.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=760205 OSZ56_RS01675 WP_000697220.1 318094..319068(+) (comGA) [Staphylococcus aureus strain BIAI 117]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=760205 OSZ56_RS01675 WP_000697220.1 318094..319068(+) (comGA) [Staphylococcus aureus strain BIAI 117]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTGCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1