Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OSS47_RS19810 Genome accession   NZ_CP113096
Coordinates   4364072..4364617 (+) Length   181 a.a.
NCBI ID   WP_064583599.1    Uniprot ID   A0A1A9KEQ3
Organism   Pseudomonas citronellolis strain G5Li.T10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4359072..4369617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSS47_RS19795 (OSS47_19795) - 4360127..4361605 (+) 1479 WP_267852408.1 sensor histidine kinase -
  OSS47_RS19800 (OSS47_19800) - 4361595..4363013 (+) 1419 WP_267852409.1 sigma-54-dependent transcriptional regulator -
  OSS47_RS19805 (OSS47_19805) - 4363572..4364075 (+) 504 WP_267852410.1 GspH/FimT family pseudopilin -
  OSS47_RS19810 (OSS47_19810) pilV 4364072..4364617 (+) 546 WP_064583599.1 type IV pilus modification protein PilV Machinery gene
  OSS47_RS19815 (OSS47_19815) - 4364618..4365394 (+) 777 WP_267852411.1 PilW family protein -
  OSS47_RS19820 (OSS47_19820) - 4365391..4365933 (+) 543 WP_267852412.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18909.54 Da        Isoelectric Point: 4.8548

>NTDB_id=760160 OSS47_RS19810 WP_064583599.1 4364072..4364617(+) (pilV) [Pseudomonas citronellolis strain G5Li.T10]
MTRRGLAGFSLIEVLVALLVICVGVLGMLAMQGRAIAYSQDMAVRGTAAALADELMETLRTDLYSTQDAGTPLTPPASSD
YYKATGSAFPAAPSSCASLASLSASQRLGCWAQRVQQALPDAASLMSSDFHICRSNGASTCSGTGSAIEIQLAWRVKSGE
CLEASPGSDPTICHYVLREEP

Nucleotide


Download         Length: 546 bp        

>NTDB_id=760160 OSS47_RS19810 WP_064583599.1 4364072..4364617(+) (pilV) [Pseudomonas citronellolis strain G5Li.T10]
ATGACGCGCCGTGGCCTGGCCGGCTTCAGCCTGATCGAAGTGCTGGTGGCGCTGCTGGTGATCTGCGTCGGCGTGCTGGG
CATGCTCGCCATGCAGGGCAGGGCGATCGCCTATTCCCAGGACATGGCGGTGCGCGGCACGGCGGCGGCGCTGGCCGACG
AGCTGATGGAGACCCTCCGCACCGACCTCTATTCCACCCAGGACGCCGGCACGCCGCTGACCCCGCCGGCCAGCTCCGAC
TACTACAAGGCCACCGGCAGCGCCTTCCCCGCGGCGCCGAGCAGTTGTGCCTCGCTCGCTTCGCTGAGCGCCTCGCAGCG
CCTGGGCTGCTGGGCGCAGCGGGTGCAGCAGGCGCTGCCCGATGCCGCCAGCCTGATGAGCAGCGACTTCCACATCTGTC
GCAGCAACGGCGCCAGCACCTGCAGCGGCACCGGCTCGGCCATCGAGATCCAGCTGGCCTGGCGGGTGAAGTCCGGCGAG
TGCCTGGAGGCCAGCCCCGGCAGCGACCCGACCATCTGCCACTACGTGCTGCGCGAGGAGCCCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9KEQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.162

98.895

0.486