Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OSV63_RS08430 Genome accession   NZ_CP113078
Coordinates   1681787..1682605 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB5075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1676787..1687605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV63_RS08415 (OSV63_08415) pilE 1677006..1677431 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  OSV63_RS08420 (OSV63_08420) pilY2 1677428..1677910 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  OSV63_RS08425 (OSV63_08425) pilY1 1677921..1681775 (-) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  OSV63_RS08430 (OSV63_08430) pilX 1681787..1682605 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSV63_RS08435 (OSV63_08435) pilW 1682602..1683603 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  OSV63_RS08440 (OSV63_08440) pilV 1683604..1684164 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSV63_RS08445 (OSV63_08445) fimU 1684158..1684631 (-) 474 WP_001214060.1 pilus assembly FimT family protein Machinery gene
  OSV63_RS08450 (OSV63_08450) ispH 1684801..1685751 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSV63_RS08455 (OSV63_08455) gmk 1685874..1686503 (+) 630 WP_000015937.1 guanylate kinase -
  OSV63_RS08460 (OSV63_08460) rpoZ 1686576..1686854 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSV63_RS08465 (OSV63_08465) - 1686893..1687023 (+) 131 Protein_1652 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=760001 OSV63_RS08430 WP_000149374.1 1681787..1682605(-) (pilX) [Acinetobacter baumannii strain AB5075]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=760001 OSV63_RS08430 WP_000149374.1 1681787..1682605(-) (pilX) [Acinetobacter baumannii strain AB5075]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993