Detailed information NTG0759999

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I95_RS25835
• Genome accession: NZ_CP124655
• Coordinates: 5416131..5417135 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2022CK-00096
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5411131..5422135

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I95_RS25820 (P7I95_25820)	-	5411614..5412621 (+)	1008	WP_003092265.1	TolB family protein	-
P7I95_RS25825 (P7I95_25825)	mutS	5412747..5415314 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
P7I95_RS25830 (P7I95_25830)	fdxA	5415381..5415704 (+)	324	WP_003092272.1	ferredoxin FdxA	-
P7I95_RS25835 (P7I95_25835)	rpoS	5416131..5417135 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P7I95_RS25840 (P7I95_25840)	-	5417240..5418133 (-)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I95_RS25845 (P7I95_25845)	-	5418179..5418814 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I95_RS25850 (P7I95_25850)	surE	5418847..5419596 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I95_RS25855 (P7I95_25855)	truD	5419584..5420651 (-)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
P7I95_RS25860 (P7I95_25860)	ispF	5420648..5421121 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I95_RS25865 (P7I95_25865)	fghA	5421192..5422043 (-)	852	WP_003117489.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=759999 P7I95_RS25835 WP_003113871.1 5416131..5417135(-) (rpoS) [Pseudomonas aeruginosa strain 2022CK-00096]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=759999 P7I95_RS25835 WP_003113871.1 5416131..5417135(-) (rpoS) [Pseudomonas aeruginosa strain 2022CK-00096]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653