Detailed information NTG0759979

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OSV60_RS16930
• Genome accession: NZ_CP113077
• Coordinates: 3595081..3595941 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152277.1
• Uniprot ID: A0A009HWK1
• Organism: Acinetobacter baumannii strain 86II/2C
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3590081..3600941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OSV60_RS16910 (OSV60_16910)	secG	3590686..3591015 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
OSV60_RS16915 (OSV60_16915)	tpiA	3591028..3591822 (-)	795	WP_032050671.1	triose-phosphate isomerase	-
OSV60_RS16920 (OSV60_16920)	pilB	3592113..3593825 (+)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OSV60_RS16925 (OSV60_16925)	pilC	3593855..3595081 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
OSV60_RS16930 (OSV60_16930)	pilD	3595081..3595941 (+)	861	WP_001152277.1	prepilin peptidase	Machinery gene
OSV60_RS16935 (OSV60_16935)	coaE	3595943..3596539 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
OSV60_RS16940 (OSV60_16940)	-	3596536..3597450 (-)	915	WP_000075011.1	DMT family transporter	-
OSV60_RS16945 (OSV60_16945)	rlmB	3597486..3598235 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
OSV60_RS16950 (OSV60_16950)	-	3598337..3598663 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
OSV60_RS16955 (OSV60_16955)	-	3598740..3600050 (-)	1311	WP_071217527.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32038.43 Da
• Isoelectric Point: 7.1041

>NTDB_id=759979 OSV60_RS16930 WP_001152277.1 3595081..3595941(+) (pilD) [Acinetobacter baumannii strain 86II/2C]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=759979 OSV60_RS16930 WP_001152277.1 3595081..3595941(+) (pilD) [Acinetobacter baumannii strain 86II/2C]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTATTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

3D structure

• AlphaFold DB: A0A009HWK1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441