Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   H7R23_RS18125 Genome accession   NZ_AP021936
Coordinates   3782684..3783010 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain WP2-W18-ESBL-11     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 3777684..3788010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R23_RS18105 (WP2W18E11_35350) - 3777791..3778417 (-) 627 WP_005065779.1 FHA domain-containing protein -
  H7R23_RS18110 (WP2W18E11_35360) gspD 3778458..3780728 (-) 2271 WP_017481932.1 type II secretion system secretin GspD -
  H7R23_RS18115 (WP2W18E11_35370) - 3780770..3781606 (-) 837 WP_005079413.1 type II secretion system protein N -
  H7R23_RS18120 (WP2W18E11_35380) gspN 3781606..3782349 (-) 744 WP_017481931.1 type II secretion system protein N -
  H7R23_RS18125 (WP2W18E11_35390) hns 3782684..3783010 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  H7R23_RS18130 (WP2W18E11_35400) - 3783205..3783645 (-) 441 WP_002121251.1 acyl-CoA thioesterase -
  H7R23_RS18135 (WP2W18E11_35410) - 3783653..3784846 (-) 1194 WP_044425064.1 membrane protein -
  H7R23_RS18140 (WP2W18E11_35420) - 3784856..3785698 (-) 843 WP_044425062.1 hypothetical protein -
  H7R23_RS18145 (WP2W18E11_35430) hemD 3785707..3786474 (-) 768 WP_182917671.1 uroporphyrinogen-III synthase -
  H7R23_RS18150 (WP2W18E11_35440) hemC 3786478..3787395 (-) 918 WP_031945074.1 hydroxymethylbilane synthase -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=75995 H7R23_RS18125 WP_000801427.1 3782684..3783010(-) (hns) [Acinetobacter pittii strain WP2-W18-ESBL-11]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=75995 H7R23_RS18125 WP_000801427.1 3782684..3783010(-) (hns) [Acinetobacter pittii strain WP2-W18-ESBL-11]
ATGAAGCCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains


Predicted by InterproScan.

(12-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1


Multiple sequence alignment