Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OSH15_RS02355 Genome accession   NZ_CP113074
Coordinates   477175..477702 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 472175..482702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH15_RS02340 (OSH15_02340) pilM 474728..475786 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OSH15_RS02345 (OSH15_02345) pilN 475786..476427 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  OSH15_RS02350 (OSH15_02350) pilO 476424..477164 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  OSH15_RS02355 (OSH15_02355) pilP 477175..477702 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OSH15_RS02360 (OSH15_02360) pilQ 477770..479935 (+) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  OSH15_RS02365 (OSH15_02365) aroK 479947..480516 (+) 570 WP_000643712.1 shikimate kinase AroK -
  OSH15_RS02370 (OSH15_02370) aroB 480545..481627 (+) 1083 WP_001193998.1 3-dehydroquinate synthase -
  OSH15_RS02375 (OSH15_02375) - 481643..482518 (+) 876 WP_000218805.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=759904 OSH15_RS02355 WP_000695065.1 477175..477702(+) (pilP) [Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=759904 OSH15_RS02355 WP_000695065.1 477175..477702(+) (pilP) [Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCTGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCCCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714