Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OSH16_RS01935 Genome accession   NZ_CP113072
Coordinates   416254..416889 (-) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A9P3CZD1
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411254..421889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH16_RS01900 (OSH16_01900) mlaE 411590..412366 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  OSH16_RS01905 (OSH16_01905) - 412366..413046 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  OSH16_RS01910 (OSH16_01910) - 413073..413714 (+) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  OSH16_RS01915 (OSH16_01915) - 413726..414013 (+) 288 WP_000250997.1 STAS domain-containing protein -
  OSH16_RS01920 (OSH16_01920) - 414083..415096 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  OSH16_RS01925 (OSH16_01925) - 415254..415835 (+) 582 WP_031379916.1 TIGR00730 family Rossman fold protein -
  OSH16_RS01930 (OSH16_01930) - 415850..416251 (+) 402 WP_000849705.1 NUDIX domain-containing protein -
  OSH16_RS01935 (OSH16_01935) comF 416254..416889 (-) 636 WP_000472273.1 phosphoribosyltransferase family protein Machinery gene
  OSH16_RS01940 (OSH16_01940) recG 416882..418927 (-) 2046 WP_031379915.1 ATP-dependent DNA helicase RecG -
  OSH16_RS01945 (OSH16_01945) - 418948..419763 (+) 816 WP_000547772.1 NAD(P)H-binding protein -
  OSH16_RS01950 (OSH16_01950) adeT2 419843..420829 (+) 987 WP_168726710.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=759812 OSH16_RS01935 WP_000472273.1 416254..416889(-) (comF) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=759812 OSH16_RS01935 WP_000472273.1 416254..416889(-) (comF) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTCCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991