Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H7R23_RS10330 Genome accession   NZ_AP021936
Coordinates   2170022..2170402 (-) Length   126 a.a.
NCBI ID   WP_182917329.1    Uniprot ID   A0A6S4UQR2
Organism   Acinetobacter pittii strain WP2-W18-ESBL-11     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2165022..2175402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R23_RS10300 (WP2W18E11_19960) tadA 2165086..2165589 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  H7R23_RS10305 (WP2W18E11_19970) hibch 2165595..2166719 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  H7R23_RS10310 (WP2W18E11_19980) ung 2166716..2167429 (-) 714 WP_005069527.1 uracil-DNA glycosylase -
  H7R23_RS10315 (WP2W18E11_19990) - 2167483..2168079 (-) 597 WP_017386831.1 6-pyruvoyl trahydropterin synthase family protein -
  H7R23_RS10320 (WP2W18E11_20000) gspK 2168307..2169266 (-) 960 WP_057085316.1 type II secretion system minor pseudopilin GspK -
  H7R23_RS10325 (WP2W18E11_20010) xcpW 2169267..2170022 (-) 756 WP_057085318.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H7R23_RS10330 (WP2W18E11_20020) xcpV 2170022..2170402 (-) 381 WP_182917329.1 type II secretion system minor pseudopilin GspI Machinery gene
  H7R23_RS10335 (WP2W18E11_20030) - 2170392..2170946 (-) 555 WP_039761075.1 type II secretion system protein -
  H7R23_RS10340 (WP2W18E11_20040) - 2170953..2171561 (-) 609 WP_057085321.1 TetR/AcrR family transcriptional regulator -
  H7R23_RS10345 (WP2W18E11_20050) ycfH 2171598..2172371 (-) 774 WP_057085323.1 TatD family hydrolase -
  H7R23_RS10350 (WP2W18E11_20060) pilZ 2172389..2172730 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  H7R23_RS10355 (WP2W18E11_20070) holB 2172741..2173721 (-) 981 WP_017482275.1 DNA polymerase III subunit delta' -
  H7R23_RS10360 (WP2W18E11_20080) kdsB 2173735..2174496 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13958.14 Da        Isoelectric Point: 9.4463

>NTDB_id=75979 H7R23_RS10330 WP_182917329.1 2170022..2170402(-) (xcpV) [Acinetobacter pittii strain WP2-W18-ESBL-11]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPLKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=75979 H7R23_RS10330 WP_182917329.1 2170022..2170402(-) (xcpV) [Acinetobacter pittii strain WP2-W18-ESBL-11]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCACAGTTTGTCGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAACAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCTACAATTAGTCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCATTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S4UQR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937

Multiple sequence alignment