Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OSH13_RS15640 Genome accession   NZ_CP113070
Coordinates   3335258..3335893 (+) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A9P3CZD1
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3330258..3340893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH13_RS15625 (OSH13_15625) adeT2 3331318..3332304 (-) 987 WP_168726710.1 putative multidrug efflux protein AdeT2 -
  OSH13_RS15630 (OSH13_15630) - 3332384..3333199 (-) 816 WP_000547772.1 NAD(P)H-binding protein -
  OSH13_RS15635 (OSH13_15635) recG 3333220..3335265 (+) 2046 WP_031379915.1 ATP-dependent DNA helicase RecG -
  OSH13_RS15640 (OSH13_15640) comF 3335258..3335893 (+) 636 WP_000472273.1 phosphoribosyltransferase family protein Machinery gene
  OSH13_RS15645 (OSH13_15645) - 3335896..3336297 (-) 402 WP_000849705.1 NUDIX domain-containing protein -
  OSH13_RS15650 (OSH13_15650) - 3336312..3336893 (-) 582 WP_031379916.1 TIGR00730 family Rossman fold protein -
  OSH13_RS15655 (OSH13_15655) - 3337051..3338064 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  OSH13_RS15660 (OSH13_15660) - 3338134..3338421 (-) 288 WP_000250997.1 STAS domain-containing protein -
  OSH13_RS15665 (OSH13_15665) - 3338433..3339074 (-) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  OSH13_RS15670 (OSH13_15670) - 3339101..3339781 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  OSH13_RS15675 (OSH13_15675) mlaE 3339781..3340557 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=759733 OSH13_RS15640 WP_000472273.1 3335258..3335893(+) (comF) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=759733 OSH13_RS15640 WP_000472273.1 3335258..3335893(+) (comF) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTCCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991