Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H7R23_RS02135 Genome accession   NZ_AP021936
Coordinates   450690..451319 (-) Length   209 a.a.
NCBI ID   WP_182917768.1    Uniprot ID   A0A6S4UGX3
Organism   Acinetobacter pittii strain WP2-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445690..456319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R23_RS02100 (WP2W18E11_04010) mlaE 446023..446799 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  H7R23_RS02105 (WP2W18E11_04020) - 446799..447479 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H7R23_RS02110 (WP2W18E11_04030) - 447506..448147 (+) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  H7R23_RS02115 (WP2W18E11_04040) - 448159..448446 (+) 288 WP_005078357.1 STAS domain-containing protein -
  H7R23_RS02120 (WP2W18E11_04050) - 448519..449532 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  H7R23_RS02125 (WP2W18E11_04060) - 449691..450272 (+) 582 WP_032036713.1 TIGR00730 family Rossman fold protein -
  H7R23_RS02130 (WP2W18E11_04070) mutT 450287..450688 (+) 402 WP_161282737.1 NUDIX hydrolase -
  H7R23_RS02135 (WP2W18E11_04080) comF 450690..451319 (-) 630 WP_182917768.1 ComF family protein Machinery gene
  H7R23_RS02140 (WP2W18E11_04090) recG 451312..453357 (-) 2046 WP_046811835.1 ATP-dependent DNA helicase RecG -
  H7R23_RS02145 (WP2W18E11_04100) - 453378..454193 (+) 816 WP_032006481.1 NAD-dependent epimerase/dehydratase family protein -
  H7R23_RS02150 (WP2W18E11_04110) - 454273..455256 (+) 984 WP_032006482.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24401.59 Da        Isoelectric Point: 9.9490

>NTDB_id=75970 H7R23_RS02135 WP_182917768.1 450690..451319(-) (comF) [Acinetobacter pittii strain WP2-W18-ESBL-11]
MFSFLNFQPLIQLFSPCSLCELGAREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTLCLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=75970 H7R23_RS02135 WP_182917768.1 450690..451319(-) (comF) [Acinetobacter pittii strain WP2-W18-ESBL-11]
ATGTTTAGTTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCACTGTGCGAGTTAGGTGCGCGAGAAAA
ATATTCACTTTGTAAAGACTGTTGGGAACAGCTGCCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTCGCCAATATATTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAACACTCTCAAAAAGGACTTTCTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGTTGCACATCCATTCATACCTTGTGCCTAGCAGCGACGCCGAAGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S4UGX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.211

100

0.842
  comF Acinetobacter baumannii D1279779

83.254

100

0.833

Multiple sequence alignment