Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OSV61_RS16855 Genome accession   NZ_CP113069
Coordinates   3583739..3585160 (+) Length   473 a.a.
NCBI ID   WP_032019145.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 29D2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3578739..3590160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV61_RS16835 (OSV61_16835) thrC 3578995..3580134 (+) 1140 WP_000063593.1 threonine synthase -
  OSV61_RS16840 (OSV61_16840) pbpG 3580241..3581287 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  OSV61_RS16845 (OSV61_16845) - 3581500..3582135 (+) 636 WP_000633799.1 response regulator -
  OSV61_RS16850 (OSV61_16850) pilS 3582146..3583714 (+) 1569 WP_001160328.1 ATP-binding protein Regulator
  OSV61_RS16855 (OSV61_16855) pilR 3583739..3585160 (+) 1422 WP_032019145.1 sigma-54 dependent transcriptional regulator Regulator
  OSV61_RS16860 (OSV61_16860) - 3585164..3586348 (-) 1185 WP_065719011.1 S41 family peptidase -
  OSV61_RS16865 (OSV61_16865) gpmI 3586364..3587911 (-) 1548 WP_000128745.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  OSV61_RS16870 (OSV61_16870) lptG 3588037..3589107 (-) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53040.18 Da        Isoelectric Point: 6.6690

>NTDB_id=759692 OSV61_RS16855 WP_032019145.1 3583739..3585160(+) (pilR) [Acinetobacter baumannii strain 29D2]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGIDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDATENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETPPKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSEDTTIDVSHLHPAPLRANISNPFASAAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=759692 OSV61_RS16855 WP_032019145.1 3583739..3585160(+) (pilR) [Acinetobacter baumannii strain 29D2]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGACTTGTGCCTATTGATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGTT
TAACCGACTTAAACCTACCCGATGGGAGCGGGATAGATTTAGTTAAACATGTCTCTCAAAATTACACTAATACTCCCATT
GCAGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTAAATCGGCAAAAAGTAGAGCATGATGCTACCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACTGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCCAATTTGGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACCGAACTCATGGAAAGTGAGCTTTTTGGGCATAAAA
AAGGTAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGCGGTAGTCTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGTGCAGTACAGGAAAAAAAGATCCGACCCGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGACTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCACGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCACCTAAACAATTAACAGAAGCGGCCGAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATA
CCACTATAGATGTATCTCATTTACATCCTGCTCCACTAAGAGCAAATATTTCTAATCCTTTTGCTTCGGCTGCTCAAAGC
ATACAAACCACTGTGGCAGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCTTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

98.732

100

0.987
  pilR Pseudomonas aeruginosa PAK

51.198

97.04

0.497