Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   OSV61_RS09965 Genome accession   NZ_CP113069
Coordinates   2113488..2113868 (-) Length   126 a.a.
NCBI ID   WP_000836914.1    Uniprot ID   A0A098SJS3
Organism   Acinetobacter baumannii strain 29D2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2108488..2118868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV61_RS09935 (OSV61_09935) tadA 2108608..2109111 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  OSV61_RS09940 (OSV61_09940) - 2109118..2110242 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  OSV61_RS09945 (OSV61_09945) ung 2110239..2110952 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  OSV61_RS09950 (OSV61_09950) - 2111003..2111599 (-) 597 WP_000908454.1 6-carboxytetrahydropterin synthase -
  OSV61_RS09955 (OSV61_09955) gspK 2111829..2112788 (-) 960 WP_065718577.1 type II secretion system minor pseudopilin GspK -
  OSV61_RS09960 (OSV61_09960) xcpW 2112788..2113471 (-) 684 WP_277848004.1 type II secretion system minor pseudopilin GspJ Machinery gene
  OSV61_RS09965 (OSV61_09965) xcpV 2113488..2113868 (-) 381 WP_000836914.1 type II secretion system minor pseudopilin GspI Machinery gene
  OSV61_RS09970 (OSV61_09970) - 2113858..2114412 (-) 555 WP_000841373.1 type II secretion system protein -
  OSV61_RS09975 (OSV61_09975) - 2114422..2115030 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  OSV61_RS09980 (OSV61_09980) - 2115068..2115841 (-) 774 WP_000497298.1 TatD family hydrolase -
  OSV61_RS09985 (OSV61_09985) - 2115859..2116200 (-) 342 WP_001183025.1 PilZ domain-containing protein -
  OSV61_RS09990 (OSV61_09990) - 2116212..2117192 (-) 981 WP_001075407.1 DNA polymerase III subunit delta' -
  OSV61_RS09995 (OSV61_09995) kdsB 2117204..2117965 (-) 762 WP_000680695.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14074.34 Da        Isoelectric Point: 10.0341

>NTDB_id=759673 OSV61_RS09965 WP_000836914.1 2113488..2113868(-) (xcpV) [Acinetobacter baumannii strain 29D2]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=759673 OSV61_RS09965 WP_000836914.1 2113488..2113868(-) (xcpV) [Acinetobacter baumannii strain 29D2]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098SJS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992