Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   OSV61_RS01435 Genome accession   NZ_CP113069
Coordinates   304631..305371 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 29D2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 299631..310371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV61_RS01420 (OSV61_01420) ponA 300218..302773 (-) 2556 WP_065718859.1 penicillin-binding protein PBP1a -
  OSV61_RS01425 (OSV61_01425) pilM 302935..303993 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OSV61_RS01430 (OSV61_01430) pilN 303993..304634 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  OSV61_RS01435 (OSV61_01435) pilO 304631..305371 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OSV61_RS01440 (OSV61_01440) pilP 305382..305909 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OSV61_RS01445 (OSV61_01445) pilQ 305977..308142 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  OSV61_RS01450 (OSV61_01450) aroK 308154..308723 (+) 570 WP_000643712.1 shikimate kinase AroK -
  OSV61_RS01455 (OSV61_01455) aroB 308752..309834 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=759653 OSV61_RS01435 WP_000076101.1 304631..305371(+) (pilO) [Acinetobacter baumannii strain 29D2]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=759653 OSV61_RS01435 WP_000076101.1 304631..305371(+) (pilO) [Acinetobacter baumannii strain 29D2]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACATGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAACAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683