Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS084_RS07805 Genome accession   NZ_CP113052
Coordinates   1520827..1521396 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Fizz     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515827..1526396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS084_RS07780 cysE 1517040..1517687 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  OS084_RS07785 cysS 1517671..1519071 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  OS084_RS07790 - 1519064..1519468 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS084_RS07795 rlmB 1519476..1520222 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS084_RS07800 - 1520222..1520746 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OS084_RS07805 sigH 1520827..1521396 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS084_RS07810 rpmG 1521511..1521654 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS084_RS07815 secE 1521710..1521892 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  OS084_RS07820 nusG 1521905..1522453 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS084_RS07825 rplK 1522634..1523056 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS084_RS07830 rplA 1523264..1523956 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS084_RS07835 rplJ 1524228..1524728 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS084_RS07840 rplL 1524771..1525139 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS084_RS07845 - 1525314..1525922 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=759624 OS084_RS07805 WP_000872873.1 1520827..1521396(+) (sigH) [Staphylococcus aureus strain Fizz]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759624 OS084_RS07805 WP_000872873.1 1520827..1521396(+) (sigH) [Staphylococcus aureus strain Fizz]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984