Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS088_RS09180 Genome accession   NZ_CP113051
Coordinates   1785669..1786064 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Viktor     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1780669..1791064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS088_RS09155 thiE 1781268..1781909 (-) 642 WP_154283798.1 thiamine phosphate synthase -
  OS088_RS09160 thiM 1781911..1782702 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  OS088_RS09165 thiD 1782686..1783516 (-) 831 WP_209205796.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS088_RS09170 tenA 1783509..1784198 (-) 690 WP_154283796.1 thiaminase II -
  OS088_RS09175 sceD 1784585..1785280 (-) 696 WP_000752002.1 lytic transglycosylase SceD -
  OS088_RS09180 ssb 1785669..1786064 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS088_RS09185 - 1786258..1786698 (+) 441 WP_000846750.1 YwpF-like family protein -
  OS088_RS09190 fabZ 1786756..1787196 (-) 441 WP_154283794.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS088_RS09195 murA 1787230..1788495 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS088_RS09200 - 1788606..1788839 (-) 234 WP_000384523.1 DUF1146 family protein -
  OS088_RS09205 - 1788971..1789063 (-) 93 WP_031789435.1 hypothetical protein -
  OS088_RS09210 - 1789455..1789859 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=759599 OS088_RS09180 WP_000932694.1 1785669..1786064(-) (ssb) [Staphylococcus aureus strain Viktor]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=759599 OS088_RS09180 WP_000932694.1 1785669..1786064(-) (ssb) [Staphylococcus aureus strain Viktor]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992