Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OS088_RS02710 Genome accession   NZ_CP113051
Coordinates   532235..533221 (+) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Viktor     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 527235..538221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS088_RS02685 trpS 527475..528464 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  OS088_RS02690 spxA 528759..529154 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  OS088_RS02695 mecA 529525..530244 (+) 720 WP_001217728.1 adaptor protein MecA -
  OS088_RS02700 ltrA 530807..532094 (+) 1288 Protein_520 group II intron reverse transcriptase/maturase -
  OS088_RS02710 coiA 532235..533221 (+) 987 WP_000959287.1 competence protein CoiA Machinery gene
  OS088_RS02715 pepF 533269..535077 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  OS088_RS02720 yjbH 535537..536343 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  OS088_RS02725 - 536366..536731 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  OS088_RS02730 - 536835..537428 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  OS088_RS02735 - 537614..537961 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=759571 OS088_RS02710 WP_000959287.1 532235..533221(+) (coiA) [Staphylococcus aureus strain Viktor]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=759571 OS088_RS02710 WP_000959287.1 532235..533221(+) (coiA) [Staphylococcus aureus strain Viktor]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979