Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS088_RS00600 Genome accession   NZ_CP113051
Coordinates   114531..115100 (+) Length   189 a.a.
NCBI ID   WP_267814370.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Viktor     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 109531..120100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS088_RS00575 cysE 110744..111391 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  OS088_RS00580 cysS 111375..112775 (+) 1401 WP_154284090.1 cysteine--tRNA ligase -
  OS088_RS00585 - 112768..113172 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS088_RS00590 rlmB 113180..113926 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS088_RS00595 - 113926..114450 (+) 525 WP_000664740.1 NYN domain-containing protein -
  OS088_RS00600 sigH 114531..115100 (+) 570 WP_267814370.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS088_RS00605 rpmG 115215..115358 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS088_RS00610 secE 115414..115596 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  OS088_RS00615 nusG 115609..116157 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS088_RS00620 rplK 116338..116760 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS088_RS00625 rplA 116968..117660 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS088_RS00630 rplJ 117932..118432 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS088_RS00635 rplL 118475..118843 (+) 369 WP_267814372.1 50S ribosomal protein L7/L12 -
  OS088_RS00640 - 119018..119626 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23082.99 Da        Isoelectric Point: 9.6015

>NTDB_id=759566 OS088_RS00600 WP_267814370.1 114531..115100(+) (sigH) [Staphylococcus aureus strain Viktor]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRLFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759566 OS088_RS00600 WP_267814370.1 114531..115100(+) (sigH) [Staphylococcus aureus strain Viktor]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCTGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979