Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS089_RS06980 Genome accession   NZ_CP113049
Coordinates   1399973..1400542 (-) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain Ahri     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1394973..1405542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS089_RS06940 - 1395447..1396055 (-) 609 WP_267814130.1 class I SAM-dependent methyltransferase -
  OS089_RS06945 rplL 1396230..1396598 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS089_RS06950 rplJ 1396641..1397141 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS089_RS06955 rplA 1397413..1398105 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS089_RS06960 rplK 1398313..1398735 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS089_RS06965 nusG 1398916..1399464 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS089_RS06970 secE 1399477..1399659 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  OS089_RS06975 rpmG 1399715..1399858 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS089_RS06980 sigH 1399973..1400542 (-) 570 WP_000872872.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS089_RS06985 - 1400623..1401147 (-) 525 WP_000664738.1 NYN domain-containing protein -
  OS089_RS06990 rlmB 1401147..1401893 (-) 747 WP_267814132.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS089_RS06995 - 1401901..1402305 (-) 405 WP_000370186.1 Mini-ribonuclease 3 -
  OS089_RS07000 cysS 1402298..1403698 (-) 1401 WP_267814133.1 cysteine--tRNA ligase -
  OS089_RS07005 cysE 1403682..1404329 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=759547 OS089_RS06980 WP_000872872.1 1399973..1400542(-) (sigH) [Staphylococcus aureus strain Ahri]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759547 OS089_RS06980 WP_000872872.1 1399973..1400542(-) (sigH) [Staphylococcus aureus strain Ahri]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979