Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OS087_RS13215 Genome accession   NZ_CP113047
Coordinates   2664115..2664801 (-) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain Sett     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2659115..2669801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS087_RS13195 rpsT 2660029..2660280 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  OS087_RS13200 holA 2660325..2661299 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  OS087_RS13205 comEC 2661356..2663557 (-) 2202 WP_267830446.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OS087_RS13210 - 2663562..2664023 (-) 462 WP_000439693.1 ComE operon protein 2 -
  OS087_RS13215 comEA 2664115..2664801 (-) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  OS087_RS13220 - 2664841..2665557 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  OS087_RS13225 rsfS 2665560..2665913 (-) 354 WP_001088022.1 ribosome silencing factor -
  OS087_RS13230 yqeK 2665914..2666498 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OS087_RS13235 nadD 2666488..2667057 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  OS087_RS13240 yhbY 2667060..2667350 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  OS087_RS13245 aroE 2667354..2668160 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  OS087_RS13250 yqeH 2668174..2669274 (-) 1101 WP_072490659.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=759516 OS087_RS13215 WP_001793467.1 2664115..2664801(-) (comEA) [Staphylococcus aureus strain Sett]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=759516 OS087_RS13215 WP_001793467.1 2664115..2664801(-) (comEA) [Staphylococcus aureus strain Sett]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974