Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   OS087_RS12965 Genome accession   NZ_CP113047
Coordinates   2616744..2617241 (-) Length   165 a.a.
NCBI ID   WP_029642894.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sett     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2611744..2622241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS087_RS12940 gcvPB 2611906..2613378 (-) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  OS087_RS12945 gcvPA 2613371..2614717 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OS087_RS12950 gcvT 2614737..2615828 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  OS087_RS12955 - 2615987..2616511 (-) 525 WP_001015119.1 shikimate kinase -
  OS087_RS12960 - 2616501..2616647 (-) 147 WP_001789879.1 hypothetical protein -
  OS087_RS12965 comGF 2616744..2617241 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  OS087_RS12970 comGE 2617159..2617458 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OS087_RS12975 comGD 2617445..2617891 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  OS087_RS12980 comGC 2617869..2618180 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  OS087_RS12985 comGB 2618194..2619264 (-) 1071 WP_086353418.1 competence type IV pilus assembly protein ComGB Machinery gene
  OS087_RS12990 comGA 2619236..2620210 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  OS087_RS12995 - 2620262..2620885 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  OS087_RS13000 - 2620882..2621211 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OS087_RS13005 - 2621211..2622197 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19196.92 Da        Isoelectric Point: 10.2192

>NTDB_id=759508 OS087_RS12965 WP_029642894.1 2616744..2617241(-) (comGF) [Staphylococcus aureus strain Sett]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTNVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=759508 OS087_RS12965 WP_029642894.1 2616744..2617241(-) (comGF) [Staphylococcus aureus strain Sett]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAAATGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(70-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

97.576

100

0.976