Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS087_RS08185 Genome accession   NZ_CP113047
Coordinates   1618987..1619556 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sett     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613987..1624556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS087_RS08160 cysE 1615200..1615847 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  OS087_RS08165 cysS 1615831..1617231 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  OS087_RS08170 - 1617224..1617628 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS087_RS08175 rlmB 1617636..1618382 (+) 747 WP_267810987.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS087_RS08180 - 1618382..1618906 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OS087_RS08185 sigH 1618987..1619556 (+) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS087_RS08190 rpmG 1619671..1619814 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS087_RS08195 secE 1619870..1620052 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  OS087_RS08200 nusG 1620065..1620613 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS087_RS08205 rplK 1620794..1621216 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS087_RS08210 rplA 1621424..1622116 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS087_RS08215 rplJ 1622388..1622888 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  OS087_RS08220 rplL 1622931..1623299 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS087_RS08225 - 1623474..1624082 (+) 609 WP_267830278.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=759496 OS087_RS08185 WP_000872876.1 1618987..1619556(+) (sigH) [Staphylococcus aureus strain Sett]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759496 OS087_RS08185 WP_000872876.1 1618987..1619556(+) (sigH) [Staphylococcus aureus strain Sett]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984