Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS087_RS02280 Genome accession   NZ_CP113047
Coordinates   408222..408617 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sett     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 403222..413617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS087_RS02255 thiE 403822..404463 (-) 642 WP_000483156.1 thiamine phosphate synthase -
  OS087_RS02260 thiM 404465..405256 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  OS087_RS02265 thiD 405240..406070 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS087_RS02270 tenA 406063..406752 (-) 690 WP_000396067.1 thiaminase II -
  OS087_RS02275 sceD 407138..407833 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  OS087_RS02280 ssb 408222..408617 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS087_RS02285 - 408811..409251 (+) 441 WP_000846746.1 YwpF-like family protein -
  OS087_RS02290 fabZ 409309..409749 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS087_RS02295 murA 409783..411048 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS087_RS02300 - 411159..411392 (-) 234 WP_000384523.1 DUF1146 family protein -
  OS087_RS02305 - 411524..411616 (-) 93 WP_001790611.1 hypothetical protein -
  OS087_RS02310 - 412011..412415 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=759486 OS087_RS02280 WP_000932694.1 408222..408617(-) (ssb) [Staphylococcus aureus strain Sett]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=759486 OS087_RS02280 WP_000932694.1 408222..408617(-) (ssb) [Staphylococcus aureus strain Sett]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992