Detailed information
Bioinformatically predicted
Overview
| Name | recF | Type | Machinery gene |
| Locus tag | LDO80_RS00685 | Genome accession | NZ_AP024933 |
| Coordinates | 124278..125309 (-) | Length | 343 a.a. |
| NCBI ID | WP_014628901.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain AA3-7 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 119278..130309
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO80_RS00660 (TthAA37_01270) | pilD | 120238..121308 (+) | 1071 | WP_223965843.1 | prepilin peptidase | Machinery gene |
| LDO80_RS00665 (TthAA37_01280) | - | 121346..121849 (+) | 504 | WP_223965844.1 | DUF2939 domain-containing protein | - |
| LDO80_RS00670 (TthAA37_01290) | - | 121863..122783 (+) | 921 | WP_223965845.1 | nitroreductase family protein | - |
| LDO80_RS00675 (TthAA37_01300) | - | 122737..123534 (-) | 798 | WP_224065400.1 | C40 family peptidase | - |
| LDO80_RS00680 (TthAA37_01310) | - | 123535..124293 (-) | 759 | WP_041443621.1 | DUF721 domain-containing protein | - |
| LDO80_RS00685 (TthAA37_01320) | recF | 124278..125309 (-) | 1032 | WP_014628901.1 | DNA replication/repair protein RecF | Machinery gene |
| LDO80_RS00690 (TthAA37_01330) | - | 125311..126483 (-) | 1173 | WP_143584253.1 | MFS transporter | - |
| LDO80_RS00695 (TthAA37_01340) | pstB | 126493..127248 (-) | 756 | WP_420910942.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| LDO80_RS00700 (TthAA37_01350) | pstA | 127276..128145 (-) | 870 | WP_224065402.1 | phosphate ABC transporter permease PstA | - |
| LDO80_RS00705 (TthAA37_01360) | pstC | 128145..129092 (-) | 948 | WP_224065403.1 | phosphate ABC transporter permease subunit PstC | - |
| LDO80_RS00710 (TthAA37_01370) | pstS | 129157..130236 (-) | 1080 | WP_054391637.1 | phosphate ABC transporter substrate-binding protein PstS | - |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 37770.67 Da Isoelectric Point: 8.9565
>NTDB_id=75943 LDO80_RS00685 WP_014628901.1 124278..125309(-) (recF) [Thermus thermophilus strain AA3-7]
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLLAEVETELGAYR
LEHRLGPGGREVFLNGKRVSLRALWELPGSVLVSPLDLEVVLGAKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLLAEVETELGAYR
LEHRLGPGGREVFLNGKRVSLRALWELPGSVLVSPLDLEVVLGAKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA
Nucleotide
Download Length: 1032 bp
>NTDB_id=75943 LDO80_RS00685 WP_014628901.1 124278..125309(-) (recF) [Thermus thermophilus strain AA3-7]
ATGCGGCTTCTCCTCTTCCGGCAGCGGAACTTCCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCCAGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCCTGGCTTCTCGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAGCACCGCCTGGGCCCCGGGGGGCGGGAGGTCTTCCTGAACGGGAAGCGGGTGAGCCTTCGGGCCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGTCGTCCTCGGGGCCAAGGAGGAGCGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTTTCCCGCCGCTACGCCGCCCTCCTTTCCGCGTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCCGGGGGGGAGGGCCTTTCCGCCTGGGACCGGGAGCTCGCCCGCTACGGGGACGAGATCGTGGCCCTGAGGCG
CCGCTTCCTCCGGCGCTTCGCCCCCATCCTGCGGGAGGTCCACGCCGCCCTCGCCGCCAAGGAGGCGGGGCTTCGCTTGG
AGGAGACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAGCGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGGGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCCAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA
ATGCGGCTTCTCCTCTTCCGGCAGCGGAACTTCCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCCAGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCCTGGCTTCTCGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAGCACCGCCTGGGCCCCGGGGGGCGGGAGGTCTTCCTGAACGGGAAGCGGGTGAGCCTTCGGGCCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGTCGTCCTCGGGGCCAAGGAGGAGCGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTTTCCCGCCGCTACGCCGCCCTCCTTTCCGCGTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCCGGGGGGGAGGGCCTTTCCGCCTGGGACCGGGAGCTCGCCCGCTACGGGGACGAGATCGTGGCCCTGAGGCG
CCGCTTCCTCCGGCGCTTCGCCCCCATCCTGCGGGAGGTCCACGCCGCCCTCGCCGCCAAGGAGGCGGGGCTTCGCTTGG
AGGAGACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAGCGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGGGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCCAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recF | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.246 |
98.251 |
0.405 |