Detailed information NTG0075942

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LDO80_RS00660
• Genome accession: NZ_AP024933
• Coordinates: 120238..121308 (+)
• Length: 356 a.a.
• NCBI ID: WP_223965843.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AA3-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 115238..126308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO80_RS00640 (TthAA37_01230)	-	115753..116535 (+)	783	WP_223971220.1	TrmH family RNA methyltransferase	-
LDO80_RS00645 (TthAA37_01240)	groES	116633..116938 (+)	306	WP_011174076.1	co-chaperone GroES	-
LDO80_RS00650 (TthAA37_01250)	groL	116951..118582 (+)	1632	WP_011174077.1	chaperonin GroEL	-
LDO80_RS00655 (TthAA37_01260)	-	118646..120178 (-)	1533	WP_224065399.1	thermostable carboxypeptidase 1	-
LDO80_RS00660 (TthAA37_01270)	pilD	120238..121308 (+)	1071	WP_223965843.1	prepilin peptidase	Machinery gene
LDO80_RS00665 (TthAA37_01280)	-	121346..121849 (+)	504	WP_223965844.1	DUF2939 domain-containing protein	-
LDO80_RS00670 (TthAA37_01290)	-	121863..122783 (+)	921	WP_223965845.1	nitroreductase family protein	-
LDO80_RS00675 (TthAA37_01300)	-	122737..123534 (-)	798	WP_224065400.1	C40 family peptidase	-
LDO80_RS00680 (TthAA37_01310)	-	123535..124293 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
LDO80_RS00685 (TthAA37_01320)	recF	124278..125309 (-)	1032	WP_014628901.1	DNA replication/repair protein RecF	Machinery gene

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38101.41 Da
• Isoelectric Point: 7.7132

>NTDB_id=75942 LDO80_RS00660 WP_223965843.1 120238..121308(+) (pilD) [Thermus thermophilus strain AA3-7]
MWPLLALFLGLAVGSFLNVVIHRLPRGESVVYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDLLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNFFLRRFKEGRAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVAFPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEGEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLL
LRQRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1071 bp

>NTDB_id=75942 LDO80_RS00660 WP_223965843.1 120238..121308(+) (pilD) [Thermus thermophilus strain AA3-7]
ATGTGGCCCCTTTTAGCCCTGTTCCTCGGTCTCGCGGTGGGTTCGTTTCTCAACGTGGTCATCCACCGCCTGCCCCGGGG
GGAGTCCGTCGTCTACCCCCCATCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCTCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGTTACGGGAACTTTTTCCTGAGGCGCTTTAAGGAGGGGAGGGCCGAGGTTCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTCGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCCTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCTTCCCCGACCGGCTCACCCTGCCCCTTTTGCCTCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTTAAAGGAAGCCTCCTCGCTGCCGGGGGGCTCGCCCTCGCCGGCGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGGCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGG
CCCTCGGGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTCTGGGCCTTCTC
CTTAGGCAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTG
GGGGGCGTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (102-209)

• Type IV leader peptidase family (Peptidase_A24) (219-319)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (9-88)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.386	100	0.478