Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS079_RS07350 Genome accession   NZ_CP113042
Coordinates   1460471..1461040 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Seraphine     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1455471..1466040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS079_RS07325 cysE 1456684..1457331 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  OS079_RS07330 cysS 1457315..1458715 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  OS079_RS07335 - 1458708..1459112 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OS079_RS07340 rlmB 1459120..1459866 (+) 747 WP_267836482.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS079_RS07345 - 1459866..1460390 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OS079_RS07350 sigH 1460471..1461040 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS079_RS07355 rpmG 1461155..1461298 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS079_RS07360 secE 1461354..1461536 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  OS079_RS07365 nusG 1461549..1462097 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS079_RS07370 rplK 1462278..1462700 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS079_RS07375 rplA 1462908..1463600 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS079_RS07380 rplJ 1463872..1464372 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS079_RS07385 rplL 1464415..1464783 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS079_RS07390 - 1464958..1465566 (+) 609 WP_267810988.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=759410 OS079_RS07350 WP_000872873.1 1460471..1461040(+) (sigH) [Staphylococcus aureus strain Seraphine]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759410 OS079_RS07350 WP_000872873.1 1460471..1461040(+) (sigH) [Staphylococcus aureus strain Seraphine]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984