Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   OS086_RS14085 Genome accession   NZ_CP113039
Coordinates   2797923..2798369 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Gwen     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2792923..2803369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS086_RS14055 gcvPA 2793849..2795195 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OS086_RS14060 gcvT 2795215..2796306 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  OS086_RS14065 - 2796465..2796989 (-) 525 WP_001015120.1 shikimate kinase -
  OS086_RS14070 - 2796979..2797125 (-) 147 WP_001792109.1 hypothetical protein -
  OS086_RS14075 comGF 2797222..2797719 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  OS086_RS14080 comGE 2797637..2797936 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  OS086_RS14085 comGD 2797923..2798369 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  OS086_RS14090 comGC 2798347..2798658 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  OS086_RS14095 comGB 2798672..2799742 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  OS086_RS14100 comGA 2799714..2800688 (-) 975 Protein_2752 competence type IV pilus ATPase ComGA -
  OS086_RS14105 - 2800740..2801363 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  OS086_RS14110 - 2801360..2801689 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OS086_RS14115 - 2801689..2802675 (-) 987 WP_000161311.1 ROK family glucokinase -
  OS086_RS14120 - 2802672..2802875 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=759387 OS086_RS14085 WP_001788899.1 2797923..2798369(-) (comGD) [Staphylococcus aureus strain Gwen]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=759387 OS086_RS14085 WP_001788899.1 2797923..2798369(-) (comGD) [Staphylococcus aureus strain Gwen]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1