Detailed information NTG0759385

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I78_RS25290
• Genome accession: NZ_CP124646
• Coordinates: 5411361..5412365 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2020CK-00185
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5406361..5417365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I78_RS25275 (P7I78_25275)	-	5406845..5407852 (+)	1008	WP_003092265.1	TolB family protein	-
P7I78_RS25280 (P7I78_25280)	mutS	5407978..5410545 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
P7I78_RS25285 (P7I78_25285)	fdxA	5410612..5410935 (+)	324	WP_003092272.1	ferredoxin FdxA	-
P7I78_RS25290 (P7I78_25290)	rpoS	5411361..5412365 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P7I78_RS25295 (P7I78_25295)	-	5412470..5413363 (-)	894	WP_003138035.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I78_RS25300 (P7I78_25300)	-	5413409..5414044 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I78_RS25305 (P7I78_25305)	surE	5414077..5414826 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I78_RS25310 (P7I78_25310)	truD	5414814..5415881 (-)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
P7I78_RS25315 (P7I78_25315)	ispF	5415878..5416351 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I78_RS25320 (P7I78_25320)	fghA	5416422..5417273 (-)	852	WP_003138034.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=759385 P7I78_RS25290 WP_003113871.1 5411361..5412365(-) (rpoS) [Pseudomonas aeruginosa strain 2020CK-00185]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=759385 P7I78_RS25290 WP_003113871.1 5411361..5412365(-) (rpoS) [Pseudomonas aeruginosa strain 2020CK-00185]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653