Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   P7I78_RS19260 Genome accession   NZ_CP124646
Coordinates   4155770..4156414 (-) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain 2020CK-00185     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4150770..4161414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I78_RS19240 (P7I78_19240) - 4151606..4152466 (+) 861 WP_226341673.1 fimbrial protein -
  P7I78_RS19250 (P7I78_19250) pgsA 4153349..4153909 (-) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P7I78_RS19255 (P7I78_19255) uvrC 4153943..4155769 (-) 1827 WP_034050113.1 excinuclease ABC subunit UvrC -
  P7I78_RS19260 (P7I78_19260) letA 4155770..4156414 (-) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  P7I78_RS19265 (P7I78_19265) pqsH 4156756..4157904 (-) 1149 WP_003119987.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  P7I78_RS19270 (P7I78_19270) - 4158522..4159550 (+) 1029 WP_003138966.1 AraC family transcriptional regulator -
  P7I78_RS19275 (P7I78_19275) - 4159566..4160780 (-) 1215 WP_003130955.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=759367 P7I78_RS19260 WP_003090351.1 4155770..4156414(-) (letA) [Pseudomonas aeruginosa strain 2020CK-00185]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=759367 P7I78_RS19260 WP_003090351.1 4155770..4156414(-) (letA) [Pseudomonas aeruginosa strain 2020CK-00185]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCTATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537