Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS086_RS02610 Genome accession   NZ_CP113039
Coordinates   475119..475514 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Gwen     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 470119..480514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS086_RS02585 thiE 470718..471359 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  OS086_RS02590 thiM 471361..472152 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  OS086_RS02595 thiD 472136..472966 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS086_RS02600 tenA 472959..473648 (-) 690 WP_000396077.1 thiaminase II -
  OS086_RS02605 sceD 474035..474730 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  OS086_RS02610 ssb 475119..475514 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS086_RS02615 - 475708..476148 (+) 441 WP_000846746.1 YwpF-like family protein -
  OS086_RS02620 fabZ 476207..476647 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS086_RS02625 murA 476681..477946 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS086_RS02630 - 478057..478290 (-) 234 WP_000384523.1 DUF1146 family protein -
  OS086_RS02635 - 478422..478514 (-) 93 WP_001790611.1 hypothetical protein -
  OS086_RS02640 - 478852..479256 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=759361 OS086_RS02610 WP_000932694.1 475119..475514(-) (ssb) [Staphylococcus aureus strain Gwen]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=759361 OS086_RS02610 WP_000932694.1 475119..475514(-) (ssb) [Staphylococcus aureus strain Gwen]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992