Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OS091_RS13630 Genome accession   NZ_CP113037
Coordinates   2679694..2680263 (-) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain Zilean     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2674694..2685263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS091_RS13590 - 2675168..2675776 (-) 609 WP_000020296.1 class I SAM-dependent methyltransferase -
  OS091_RS13595 rplL 2675951..2676319 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OS091_RS13600 rplJ 2676362..2676862 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  OS091_RS13605 rplA 2677134..2677826 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  OS091_RS13610 rplK 2678034..2678456 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  OS091_RS13615 nusG 2678637..2679185 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OS091_RS13620 secE 2679198..2679380 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  OS091_RS13625 rpmG 2679436..2679579 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  OS091_RS13630 sigH 2679694..2680263 (-) 570 WP_000872872.1 sigma-70 family RNA polymerase sigma factor Regulator
  OS091_RS13635 - 2680344..2680868 (-) 525 WP_000664738.1 NYN domain-containing protein -
  OS091_RS13640 rlmB 2680868..2681614 (-) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OS091_RS13645 - 2681622..2682026 (-) 405 WP_000370186.1 Mini-ribonuclease 3 -
  OS091_RS13650 cysS 2682019..2683419 (-) 1401 WP_000631977.1 cysteine--tRNA ligase -
  OS091_RS13655 cysE 2683403..2684050 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=759348 OS091_RS13630 WP_000872872.1 2679694..2680263(-) (sigH) [Staphylococcus aureus strain Zilean]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=759348 OS091_RS13630 WP_000872872.1 2679694..2680263(-) (sigH) [Staphylococcus aureus strain Zilean]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979